View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16393_high_3 (Length: 435)
Name: NF16393_high_3
Description: NF16393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16393_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 3744074 - 3744490
Alignment:
| Q |
1 |
agagaagatttttggaatatggaacagagaagctttgcacaagagaaagcatatggcatagatagaaacagtgacacatcattcgggataaaacgctatg |
100 |
Q |
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| T |
3744074 |
agagaagatttttggaatatggaacagagaagctttgcacaagagaaagcatatggcatagattgaaacagtgacacatcattcgggataaaacgctatg |
3744173 |
T |
|
| Q |
101 |
tttagcattattgaaacatagcaaaaacgttttatcccgtagcatcccaaatgatgtatcactgtccctatatctatgtcatgtgctttctcttgtgcaa |
200 |
Q |
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| T |
3744174 |
tttagcattattgaaacatagcaaaaacgttttatcccgtagcatcccaaatgatgtatcactgttcctatatctatgccatgtgctttctcttgtgtaa |
3744273 |
T |
|
| Q |
201 |
agcttagtcttcaaactcagtaaaattttgaaatatatataattttataaatttatttgatagtcctgagatggttgaacaatgaattatcaatcatcaa |
300 |
Q |
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| T |
3744274 |
agcttagtcttcaaactcagtaaaattttgaaatatctataatttcataaatttatttgatagtcctgagatggttgaacaatgaattatcaatcatcaa |
3744373 |
T |
|
| Q |
301 |
ttatgctagcccaaagctcgttccgtagaaggatttatcgcgtcaaaagtagcaagacatagtgaataaaatatccaacttaaaacaagaaaacatatgc |
400 |
Q |
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| T |
3744374 |
ttatgctagctcaaagctcgttccgtagaaggatttatcgcgtcataagtagcaagacatagcgaataaaatatccaacttaaaacaagaaaacatatgc |
3744473 |
T |
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| Q |
401 |
taaatttaatcaaatac |
417 |
Q |
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| T |
3744474 |
taaatttaatcaaatac |
3744490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 3744278 - 3744217
Alignment:
| Q |
30 |
aagctttgcacaagagaaagcatatggcatag--atagaaacagtgacacatcattcgggat |
89 |
Q |
| |
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||||||| |||||||||||||| ||||||||| |||| |||||||| |||||||| ||||| |
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| T |
3744278 |
aagctttacacaagagaaagcacatggcatagatataggaacagtgatacatcatttgggat |
3744217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 20196243 - 20196286
Alignment:
| Q |
22 |
gaacagagaagctttgcacaagagaaagcatatggcatagatag |
65 |
Q |
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| T |
20196243 |
gaacaaagaagttttgcacaagagaaagcatgtggcatagatag |
20196286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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