View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16394_high_1 (Length: 645)

Name: NF16394_high_1
Description: NF16394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16394_high_1
NF16394_high_1
[»] chr5 (14 HSPs)
chr5 (1-645)||(30223894-30224545)
chr5 (7-153)||(13361101-13361248)
chr5 (7-111)||(14626335-14626439)
chr5 (7-104)||(39741382-39741479)
chr5 (7-139)||(13639445-13639577)
chr5 (9-155)||(40324309-40324456)
chr5 (72-197)||(3577707-3577833)
chr5 (7-102)||(5548206-5548301)
chr5 (7-57)||(3577659-3577708)
chr5 (383-430)||(12214980-12215027)
chr5 (342-406)||(38138677-38138741)
chr5 (94-129)||(5548486-5548521)
chr5 (163-208)||(13639639-13639684)
chr5 (464-525)||(13886574-13886635)
[»] scaffold0157 (2 HSPs)
scaffold0157 (10-221)||(21253-21465)
scaffold0157 (132-220)||(21132-21220)
[»] chr4 (11 HSPs)
chr4 (10-221)||(12499012-12499224)
chr4 (7-221)||(44362909-44363124)
chr4 (8-185)||(1351300-1351478)
chr4 (10-220)||(6216196-6216409)
chr4 (7-221)||(18879205-18879420)
chr4 (7-155)||(36061080-36061229)
chr4 (7-197)||(49888163-49888358)
chr4 (7-153)||(43365916-43366064)
chr4 (32-142)||(51871742-51871852)
chr4 (137-221)||(44363371-44363455)
chr4 (132-220)||(12499257-12499345)
[»] chr1 (15 HSPs)
chr1 (7-221)||(43670694-43670909)
chr1 (7-220)||(15061448-15061661)
chr1 (22-219)||(42508254-42508452)
chr1 (10-153)||(3505181-3505325)
chr1 (7-221)||(38275754-38275968)
chr1 (7-149)||(12857340-12857483)
chr1 (7-153)||(44166523-44166669)
chr1 (7-155)||(27323514-27323661)
chr1 (7-178)||(7191980-7192152)
chr1 (7-155)||(26767736-26767884)
chr1 (7-147)||(41666141-41666282)
chr1 (106-221)||(43344796-43344912)
chr1 (7-149)||(9388911-9389054)
chr1 (7-73)||(43344914-43344980)
chr1 (163-209)||(15061721-15061767)
[»] chr3 (12 HSPs)
chr3 (7-219)||(38216199-38216412)
chr3 (10-153)||(49726468-49726611)
chr3 (7-221)||(25189514-25189729)
chr3 (7-221)||(39450617-39450832)
chr3 (7-188)||(43071571-43071754)
chr3 (7-197)||(39492402-39492593)
chr3 (22-155)||(38018311-38018445)
chr3 (432-525)||(2812474-2812567)
chr3 (8-129)||(14742052-14742167)
chr3 (14-99)||(39933643-39933728)
chr3 (163-221)||(39492282-39492340)
chr3 (6-83)||(1451850-1451924)
[»] chr2 (7 HSPs)
chr2 (7-199)||(35020992-35021184)
chr2 (7-221)||(40609774-40609989)
chr2 (10-173)||(20586381-20586544)
chr2 (7-99)||(35695422-35695514)
chr2 (7-129)||(34922102-34922219)
chr2 (41-110)||(1602783-1602852)
chr2 (7-88)||(43227734-43227815)
[»] chr7 (12 HSPs)
chr7 (7-140)||(20896385-20896519)
chr7 (7-221)||(29366348-29366563)
chr7 (10-219)||(37327296-37327506)
chr7 (7-221)||(44857934-44858147)
chr7 (7-147)||(46303633-46303773)
chr7 (7-153)||(23416004-23416148)
chr7 (27-152)||(42457402-42457528)
chr7 (44-155)||(27569366-27569477)
chr7 (7-129)||(3565460-3565582)
chr7 (7-129)||(27567446-27567568)
chr7 (7-109)||(45871825-45871927)
chr7 (126-221)||(27567843-27567937)
[»] chr8 (12 HSPs)
chr8 (18-197)||(36632657-36632837)
chr8 (7-221)||(3207736-3207941)
chr8 (7-176)||(20771467-20771637)
chr8 (7-176)||(20781261-20781431)
chr8 (7-178)||(39186271-39186437)
chr8 (7-219)||(38255269-38255482)
chr8 (23-155)||(24587220-24587353)
chr8 (7-155)||(13267910-13268059)
chr8 (7-58)||(14954178-14954229)
chr8 (7-65)||(32089182-32089240)
chr8 (39-83)||(3170959-3171003)
chr8 (132-197)||(39186174-39186240)
[»] chr6 (9 HSPs)
chr6 (10-148)||(2236811-2236949)
chr6 (7-221)||(28587613-28587827)
chr6 (7-141)||(4837883-4838015)
chr6 (10-124)||(6196820-6196934)
chr6 (7-178)||(10244328-10244501)
chr6 (7-92)||(33819922-33820007)
chr6 (7-98)||(12480444-12480535)
chr6 (126-197)||(6198074-6198145)
chr6 (163-203)||(4838077-4838117)
[»] scaffold0062 (2 HSPs)
scaffold0062 (7-155)||(20335-20485)
scaffold0062 (7-155)||(30503-30653)
[»] scaffold0122 (1 HSPs)
scaffold0122 (7-150)||(17595-17740)
[»] scaffold0633 (1 HSPs)
scaffold0633 (7-147)||(8947-9088)
[»] scaffold0938 (1 HSPs)
scaffold0938 (45-155)||(3967-4079)
[»] scaffold0136 (1 HSPs)
scaffold0136 (163-221)||(32350-32406)


Alignment Details
Target: chr5 (Bit Score: 508; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 645
Target Start/End: Original strand, 30223894 - 30224545
Alignment:
Q  1 atatcaatgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaat 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||    
T  30223894 atatcaatgttttaaatgaagttttcaatggaattttgttacaatttcatccatgttaatattttttcatcttcagatcatattccacgacatttaaaat 30223993  T
Q  101 ttatcacatcacatttttatagttcaaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataagg 200  Q
    ||||||||||||||||||| | || ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  30223994 ttatcacatcacatttttaaattttaaaatatgatggagggatcaaaactgtcgatttttacaatagggggaccaattatgcaaaatgataaaaataagg 30224093  T
Q  201 ggatcaaacatgcaattaagctcatctaaaaagaaagattcaatcaaagnnnnnnnc--------taactcatatgaaatcgaagataaagaataaaaat 292  Q
    ||||||||  |||||||||||||||||||||| ||||||||||||||||       |        ||||||||||||||||||||||||  |||||||||    
T  30224094 ggatcaaaactgcaattaagctcatctaaaaacaaagattcaatcaaagaaaaaaacaaaaaaactaactcatatgaaatcgaagataat-aataaaaat 30224192  T
Q  293 atatgtcgacattaattaaaacgattgcaagtaagacgttgtagcttaatgtaaattgcctagaaaacgaagatattgagatgaatgcggaaataaaaga 392  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30224193 atatgtcgacattaattaaaacgatt-caagtaagtcgttgtagcttaatgtaaattgcctagaaaacgaagatattgagatgaatgcggaaataaaaga 30224291  T
Q  393 ttagttaatttgttgagaatagaatatacaccaactaatgctatccaaattcttgtaatgtaaatgtatacataaacataagcaaatttatatatgatgt 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30224292 ttagttaatttgttgagaatagaatatacaccaactaatgctatccaaattcttgtaatgtaaatgtatacataaacatgagcaaatttatatatgatgt 30224391  T
Q  493 cttatgcaaaagtaaatcatctcatcttctttgctaacttgattttggacgtgtctt-gtgacaatacaatttagtaaattatttcttgttaaaacaaat 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  30224392 cttatgcaaaagtaaatcatctcatcttctttgctaacttgattttggacgtgtcttggtgacaatacaatttagtaaaatatttcttgttaaaacaaat 30224491  T
Q  592 gttcaagtgattagcaactcacgaaaaaatagcagtataatacaaaaattttga 645  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30224492 gttcaagtgattagcaactcacgaaaaaatagcagtataatacaaaatttttga 30224545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 13361101 - 13361248
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    |||||||||||||| |||| || | ||||||||||||||||||||||| || || |||||| |||||||||||||||||||| |||||||||||||||||    
T  13361101 atgttttaaatgaaatttttaaaggaattttgttacaatttcatcgatattaatctttttctatcttcatatcatattccactacatttaaaatttatca 13361200  T
Q  107 catcacatttttatagttcaaa-atatgatggagggatcaaaactgtc 153  Q
    |||| |||||||||| |||||| |||||||||| |||  |||||||||    
T  13361201 catcccatttttataattcaaatatatgatggaaggactaaaactgtc 13361248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 14626439 - 14626335
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||||| || | |||||||||| |||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||    
T  14626439 atgttttaaatgaagtttttaaaggaattttgttataatttcatcgatgttgatcttttcctatcttcatatcatattccacgacatttaaaatttatca 14626340  T
Q  107 catca 111  Q
    |||||    
T  14626339 catca 14626335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 39741479 - 39741382
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttat 104  Q
    |||||||||||||||||||||| | ||||| |||| |||||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||||||||    
T  39741479 atgttttaaatgaagttttcaagggaatttcgttataatttcatcgatgttgatcttttttcatcttcagatcatatttcacgatatttaaaatttat 39741382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 13639577 - 13639445
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||||| ||    ||||||||||||||| ||||||||||||||||||| |||| |||||||||||| | ||||||||||| || |||    
T  13639577 atgttttaaatgaagtttttaagagcattttgttacaattttatcgatgttgatatttttctatctccatatcatattctaggacatttaaaaatt-tca 13639479  T
Q  107 catcacatttttatagtt-caaaatatgatggag 139  Q
    ||||  ||||||||| ||  ||||||||||||||    
T  13639478 catccgatttttataattaaaaaatatgatggag 13639445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 40324456 - 40324309
Alignment:
Q  9 gttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcaca 108  Q
    ||||||||||  ||||||||   |||||| |||  ||||||||||||||||||||||  | |||||  |||||||  ||||||||||||||| |||||||    
T  40324456 gttttaaatggtgttttcaagagaattttcttatgatttcatcgatgttgatattttctcgtcttccgatcatatatcacgacatttaaaatctatcaca 40324357  T
Q  109 tcacatttttatagtt-caaaatatgatggagggatcaaaactgtcga 155  Q
    |||| ||| | |||||  |||||||||| |||||||||||||| ||||    
T  40324356 tcacttttatttagttaaaaaatatgatagagggatcaaaactatcga 40324309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 3577707 - 3577833
Alignment:
Q  72 ttcatatcatattccacgacatttaaaatttatcacatcacatttttatagttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggg 170  Q
    |||| ||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||  ||| |  |||||||||| |  || | ||||||||    
T  3577707 ttcaaatcatattccatgacatttaaaatttatcacatcacatctttatagttcaaaaatatgagcgagaggccaaaactgtcaaattttaaaatagggg 3577806  T
Q  171 gaccaattatgcaaaatgataaaaata 197  Q
    |||||||| | ||||||| | ||||||    
T  3577807 gaccaattcttcaaaatggtgaaaata 3577833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 5548206 - 5548301
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaattt 102  Q
    |||||||||||||| |||| ||  |||||||| ||||||||||||||||||||| |||||  | ||||| || |||||||| ||||||||||||||    
T  5548206 atgttttaaatgaaatttttaagaaaattttgatacaatttcatcgatgttgatttttttttaacttcagatgatattccatgacatttaaaattt 5548301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 3577659 - 3577708
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgtt 57  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  3577659 atgttttaaatgaagttttcaaggaa-ttttgttacaatttcatcgatgtt 3577708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 383 - 430
Target Start/End: Original strand, 12214980 - 12215027
Alignment:
Q  383 aaataaaagattagttaatttgttgagaatagaatatacaccaactaa 430  Q
    |||||||||||||||||||| ||| |||||| ||||||||||||||||    
T  12214980 aaataaaagattagttaattagttaagaatataatatacaccaactaa 12215027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 342 - 406
Target Start/End: Complemental strand, 38138741 - 38138677
Alignment:
Q  342 tgtaaattgcctagaaaacgaagatattgagatgaatgcggaaataaaagattagttaatttgtt 406  Q
    ||||||||| |||||||| |||||||| ||||||||| | |||||||||||| || || ||||||    
T  38138741 tgtaaattgtctagaaaaagaagatatggagatgaataccgaaataaaagataagctattttgtt 38138677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 5548486 - 5548521
Alignment:
Q  94 ttaaaatttatcacatcacatttttatagttcaaaa 129  Q
    |||||||||||||||| |||||||||||||||||||    
T  5548486 ttaaaatttatcacattacatttttatagttcaaaa 5548521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 13639639 - 13639684
Alignment:
Q  163 aatagggggaccaattatgcaaaatgataaaaataaggggatcaaa 208  Q
    |||||||||||||||| ||||||||||| ||||||| |||| ||||    
T  13639639 aatagggggaccaattttgcaaaatgatgaaaataaagggaccaaa 13639684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 525
Target Start/End: Original strand, 13886574 - 13886635
Alignment:
Q  464 ataaacataagcaaatttatatatgatgtcttatgcaaaagtaaatcatctcatcttctttg 525  Q
    |||||||| |||||||||||||||| | | || |||||||  |||||||||||||| |||||    
T  13886574 ataaacatgagcaaatttatatatggtattttttgcaaaaacaaatcatctcatctcctttg 13886635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 137; Significance: 3e-71; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 21253 - 21465
Alignment:
Q  10 ttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcacat 109  Q
    ||||||||||||||||||| | ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  21253 ttttaaatgaagttttcaagggaattttgttacaatttcattgatgttgatctttttccatcttcatatcatattccacgacatttaaaatttaccacat 21352  T
Q  110 cacatttttatagttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatcaaa 208  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||  || | |||||||||||||||| ||||||||| | |||||| ||||||||||    
T  21353 cacatttttatagttcaaaaatatgatggagggaccaaaactgtcgaattttaaaatagggggaccaattctgcaaaatggtgaaaatagggggatcaaa 21452  T
Q  209 catgcaattaagc 221  Q
      ||||| |||||    
T  21453 actgcaaataagc 21465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 220
Target Start/End: Complemental strand, 21220 - 21132
Alignment:
Q  132 tgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatcaaacatgcaattaag 220  Q
    |||| |||||| ||||| ||||||  || | ||||||||||||||||  ||||||| || ||||||||||||| |||  ||||||||||    
T  21220 tgatagagggaccaaaattgtcgaattttaaaatagggggaccaatttcgcaaaattattaaaataaggggataaaaactgcaattaag 21132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 12499224 - 12499012
Alignment:
Q  10 ttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcacat 109  Q
    ||||||||||||||||||| | ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  12499224 ttttaaatgaagttttcaagggaattttgttacaatttcattgatgttgatctttttccatcttcatatcatattccacgacatttaaaatttaccacat 12499125  T
Q  110 cacatttttatagttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatcaaa 208  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||  || | |||||||||||||||| ||||||||| | |||||| ||||||||||    
T  12499124 cacatttttatagttcaaaaatatgatggagggaccaaaactgtcgaattttaaaatagggggaccaattctgcaaaatggtgaaaatagggggatcaaa 12499025  T
Q  209 catgcaattaagc 221  Q
      ||||| |||||    
T  12499024 actgcaaataagc 12499012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 44363124 - 44362909
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||  ||||| ||| | |||||||||||||||||||||||||||||||||||||||    
T  44363124 atgttttaaatgaagttttcaagggaattttgttacaatttcatcgacattgatctttattcatcttcatatcatattccacgacatttaaaatttatca 44363025  T
Q  107 catcacatttttatagttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatc 205  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||  || | || ||||||||||||| | ||||||| | |||||| ||||| |    
T  44363024 catcacatttttatagttcaaaaatatgatggagggaccaaaactgtcgagttttaaaacagggggaccaattctacaaaatggtgaaaatagggggacc 44362925  T
Q  206 aaacatgcaattaagc 221  Q
    |||  |||||||||||    
T  44362924 aaaactgcaattaagc 44362909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 1351478 - 1351300
Alignment:
Q  8 tgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcac 107  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||    
T  1351478 tgttttaaatgaatttttcaaggaaattttgttacaatttcatcgatgttgatctttttccatcttcagatcatattccacgatatttaaaatttatcac 1351379  T
Q  108 atcacatttttatagttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaa 185  Q
    |||||||||||||||||| |||||||||| |||||| ||||| ||||||  || | |||| ||| ||||||| ||||||    
T  1351378 atcacatttttatagttcaaaaatatgatagagggaccaaaattgtcgaattttaaaataagggaaccaattctgcaaa 1351300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 6216409 - 6216196
Alignment:
Q  10 ttttaaatgaagttttcaatgaaattttgtt---acaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    |||||||||||||||| || |||||||||||   |||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||    
T  6216409 ttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttcagatcatattccacgacattgaaaatttatca 6216310  T
Q  107 catcacatttttatagttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatc 205  Q
    |||||| |||||||||||| ||||||||||||||||| ||||||| ||||  || | |||||||||||||||| |||||| || | ||||| |||||| |    
T  6216309 catcacctttttatagttcaaaaatatgatggagggaccaaaactatcgaattttaaaatagggggaccaattctgcaaagtggtgaaaat-aggggacc 6216211  T
Q  206 aaacatgcaattaag 220  Q
    |||  ||||||||||    
T  6216210 aaaattgcaattaag 6216196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 18879205 - 18879420
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| ||||||||||||    
T  18879205 atgttttaaatgaagttatcaaggaaaatttgttacaatttcatcgatgttgatctttttccatcttcagatcatattctacgacatataaaatttatca 18879304  T
Q  107 catcacatttttatagttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatc 205  Q
     || |||||||| |||||| ||||||||||||||||| ||||| |||| |  || | | |||||||| ||||||||||||||| | |||||| ||||| |    
T  18879305 aataacatttttttagttcaaaaatatgatggagggaccaaaattgtcaaattttaaattagggggatcaattatgcaaaatggtgaaaatagggggacc 18879404  T
Q  206 aaacatgcaattaagc 221  Q
    |||  |||||||||||    
T  18879405 aaaattgcaattaagc 18879420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 7 - 155
Target Start/End: Complemental strand, 36061229 - 36061080
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||| ||  ||| || | ||||||||| |||||| || ||||||||| |||||||||||||| |||||||||||||||||||||||||||||     
T  36061229 atgttttaaataaaaattttaaaggaattttgttgcaattttattgatgttgatctttttccatcttcagatcatattccacgacatttaaaatttatcg 36061130  T
Q  107 catcacatttttatagttc-aaaatatgatggagggatcaaaactgtcga 155  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  36061129 catcacatttttatagttcaaaaatatgatggagggaccaaaactgtcga 36061080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 49888358 - 49888163
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaa--tttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttat 104  Q
    ||||||||||||||||||||||   |||||||||||||  ||| || || ||||||  ||||||||||||| |||||||| ||||| |||||||||||||    
T  49888358 atgttttaaatgaagttttcaagagaattttgttacaaaatttaatggacgttgatcgttttccatcttcaaatcatattacacgatatttaaaatttat 49888259  T
Q  105 cacatcacatttttatagttc-aaaatatgatggagggatcaaaactgtcg-atatta-acaatagggggaccaattatgcaaaatgataaaaata 197  Q
    ||||||||||||||||||||| |||||||||| |||||| || || ||| | || ||| | |||||| ||||||||  ||||||||||||||||||    
T  49888258 cacatcacatttttatagttcaaaaatatgatagagggaccacaattgtagaattttataaaataggaggaccaatcctgcaaaatgataaaaata 49888163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 43365916 - 43366064
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||||| || | |||||| |||| |||||||||||||| |||||||  ||| |||| ||||||| |||| ||||||||||  |||||    
T  43365916 atgttttaaatgaagtttttaagggaattttcttacgatttcatcgatgtttatattttctcatattcagatcatataccacaacatttaaaacctatca 43366015  T
Q  107 catcacatttttatagtt---caaaatatgatggagggatcaaaactgtc 153  Q
    |||||| ||||| |||||    ||||||||||||||||| || |||||||    
T  43366016 catcaccttttt-tagttaaaaaaaatatgatggagggaccataactgtc 43366064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 51871742 - 51871852
Alignment:
Q  32 aattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcacatcacatttttatagtt-caaaat 130  Q
    |||||| |||| |||||||| |||||||||||||  |||||||||||||||| |||||||| |||||| ||||||||||||| |||| |||||  |||||    
T  51871742 aattttcttacgatttcatcaatgttgatattttatcatcttcatatcatataccacgacagttaaaacttatcacatcacaatttt-tagttaaaaaat 51871840  T
Q  131 atgatggaggga 142  Q
    || |||||||||    
T  51871841 ataatggaggga 51871852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 44363371 - 44363455
Alignment:
Q  137 gagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatcaaacatgcaattaagc 221  Q
    |||||| ||||| ||||||  || | ||||||||||||||||  |||||||||| |||||||||||| ||||  |||||||||||    
T  44363371 gagggaccaaaattgtcgaattttaaaatagggggaccaatttcgcaaaatgatgaaaataaggggaccaaaactgcaattaagc 44363455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 12499257 - 12499345
Alignment:
Q  132 tgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatcaaacatgcaattaag 220  Q
    |||| |||||| ||||| ||||||  || | ||||||||||||||||  ||||||| || ||||||||||||| |||  ||||||||||    
T  12499257 tgatagagggaccaaaattgtcgaattttaaaatagggggaccaatttcgcaaaattattaaaataaggggataaaaactgcaattaag 12499345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 3e-56; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 43670909 - 43670694
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||| ||||||||||| || | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43670909 atgtttttaatgaagtttttaagggaattttgttacaatttcatcgatgttgatatttttctatcttcatatcatattccacgacatttaaaatttatca 43670810  T
Q  107 catcacatttttatagttcaaa-atatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatc 205  Q
    ||||||| | |||||||||||| |||||||||||||| ||| || |||||  || | |||||| ||||||||| |||||||   | |||||| ||||| |    
T  43670809 catcacactcttatagttcaaatatatgatggagggaccaagacagtcgaattttaaaataggaggaccaattttgcaaaagagtgaaaatagggggacc 43670710  T
Q  206 aaacatgcaattaagc 221  Q
    |||  |||||||||||    
T  43670709 aaaactgcaattaagc 43670694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 15061661 - 15061448
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||  |||| |||||||| ||||||||| |||||||||||||||||||     
T  15061661 atgttttaaatgaagtttttaaggaaattttgttacaatttcatcgatgttgatcattttacatcttcagatcatattcaacgacatttaaaatttatcc 15061562  T
Q  107 catcacatttttatagttcaaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatca 206  Q
    ||||||||||||| |||||||||||||||| | ||| |||||||||| |  || | |||||| ||| ||||| | ||||||||| |||||| || |||||    
T  15061561 catcacatttttaaagttcaaaatatgatgaatggaccaaaactgtcaaattttaaaataggaggatcaattctacaaaatgatgaaaatatggagatca 15061462  T
Q  207 aacatgcaattaag 220  Q
    ||  ||||||||||    
T  15061461 aaactgcaattaag 15061448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 42508452 - 42508254
Alignment:
Q  22 ttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcacatcacatttttata 121  Q
    ||||||| | ||||||||| |||||| |||||||||||| |||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  42508452 ttttcaagggaattttgttgcaattttatcgatgttgatctttttctatcttcagatcaaattccacgacatttaaaatttatcacatcacatttttata 42508353  T
Q  122 gttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatcaaacatgcaattaa 219  Q
    |||| ||||||||| ||| ||| ||||||||||||  || | ||||||||||||| || || |||||| | |||||| | ||| ||||  |||||||||    
T  42508352 gttcaaaaatatgacggaaggaccaaaactgtcgaattttaaaatagggggaccatttctgtaaaatggtgaaaataggaggaccaaaactgcaattaa 42508254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 3505181 - 3505325
Alignment:
Q  10 ttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcacat 109  Q
    ||||||||| |||||| ||   |||||||||||||||| |||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  3505181 ttttaaatggagttttaaagagaattttgttacaattttatcgatgttgattttttttcatcttcagatcatattccacgacctttaaaatttatcacat 3505280  T
Q  110 cacatttttatagttc-aaaatatgatggagggatcaaaactgtc 153  Q
    || ||||||||||||| ||||||||||  ||||||||||||||||    
T  3505281 caaatttttatagttcaaaaatatgatttagggatcaaaactgtc 3505325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 38275968 - 38275754
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    |||||||||||||||||||||| | ||||    | ||| |||||| |||||||| || || |||||||| ||  ||||||| ||||||||||||||||||    
T  38275968 atgttttaaatgaagttttcaagggaattcgcct-caacttcatcaatgttgatcttctttcatcttcagattgtattccatgacatttaaaatttatca 38275870  T
Q  107 catcacatttttatagttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatc 205  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||  ||||  || | |||||||| ||||| |  |||||||| | |||||| ||||| |    
T  38275869 catcacatttttatagttcaaaaatatgatggagggaccaaaaccatcgaattttaaaataggggtaccaactcggcaaaatggtgaaaatagggggacc 38275770  T
Q  206 aaacatgcaattaagc 221  Q
    ||| ||||||||||||    
T  38275769 aaatatgcaattaagc 38275754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 12857483 - 12857340
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    |||||||||||||||||||||| | || ||| || |||||| || ||||||||| ||||| |||||| | ||||||||||| ||||||||||||| ||||    
T  12857483 atgttttaaatgaagttttcaaaggaactttattgcaattttattgatgttgatcttttttcatctttagatcatattccatgacatttaaaattcatca 12857384  T
Q  107 catcacatttttatagttc-aaaatatgatggagggatcaaaac 149  Q
    ||||||||||||||||||| |||||| |||||| ||| ||||||    
T  12857383 catcacatttttatagttcaaaaatacgatggaaggaccaaaac 12857340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 7 - 153
Target Start/End: Complemental strand, 44166669 - 44166523
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||| ||||||| || | ||||||||| |||||| || ||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||    
T  44166669 atgttttaaataaagtttttaagggaattttgttgcaattt-atggatgttgatcttttttcatcttcagatcatattccacgatatttaaaatttatca 44166571  T
Q  107 catcacatttttatagttc-aaaatatgatggagggatcaaaactgtc 153  Q
     |||| ||||||||||||| ||||||| ||||| ||| ||||||||||    
T  44166570 gatcatatttttatagttcaaaaatataatggatggaccaaaactgtc 44166523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 27323514 - 27323661
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||||| || |||||||| |||| ||||||| ||||||||||||||  |||||| | ||| ||| |||||||||||||||  |||||    
T  27323514 atgttttaaatgaagtttttaaggaaatttt-ttacgatttcatggatgttgatattttatcatctttagatcgtataccacgacatttaaaacctatca 27323612  T
Q  107 catcacatttttatag-ttcaaaatatgatggagggatcaaaactgtcga 155  Q
    |||||| ||||| ||| || ||||||||||||||||| ||||||||||||    
T  27323613 catcaccttttt-tagttttaaaatatgatggagggaccaaaactgtcga 27323661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 7 - 178
Target Start/End: Original strand, 7191980 - 7192152
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    |||||||||||| ||||||||| | |||| | |||| ||||||||||||||||||||||  |||||||| |||||||  || || ||||||||| |||||    
T  7191980 atgttttaaatggagttttcaaaggaattattttacgatttcatcgatgttgatattttatcatcttcagatcatatatcatgatatttaaaatctatca 7192079  T
Q  107 catcacatttttatagtt-caaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaatt 178  Q
    |||||| ||||| |||||  |||||||||  |||||| ||||||||||||  || | |||||||||| |||||    
T  7192080 catcacctttttttagttaaaaaatatgacagagggaccaaaactgtcgaattttaaaatagggggatcaatt 7192152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 26767736 - 26767884
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||| ||||||||||||| ||  || |||| |||  |||| |||||||||||||||||  |||||||||||||||| ||| |||||||||||  |||||    
T  26767736 atgttctaaatgaagtttttaagaaagttttcttatgattttatcgatgttgatattttctcatcttcatatcatataccaagacatttaaaacctatca 26767835  T
Q  107 catcacatttttatagttcaaaatatgatggagggatcaaaactgtcga 155  Q
    |||||| | ||| ||||| ||||||||| ||||||| ||||||||||||    
T  26767836 catcacctctttttagttaaaaatatgacggagggaccaaaactgtcga 26767884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 41666282 - 41666141
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||||||||  ||||||| ||||  ||||  ||| | |||||||||  ||| |||||||||||| |||||||||| ||||  |||||    
T  41666282 atgttttaaatgaagttttcaagaaaattttcttacgttttcgccgacgatgatattttctcattttcatatcatataccacgacattcaaaacctatca 41666183  T
Q  107 catca-catttttatagttcaaaatatgatggagggatcaaa 147  Q
    ||||| | ||||| ||||| ||||||| | ||||||| ||||    
T  41666182 catcaccttttttttagttaaaaatataacggagggaccaaa 41666141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 43344912 - 43344796
Alignment:
Q  106 acatcacatttttatagttcaaaa-tatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggat 204  Q
    ||||||||||||||||||| |||| ||||||| ||||| |||| |||||||  || | |||||||||||||||| |||||||| || |||||| || ||     
T  43344912 acatcacatttttatagtttaaaaatatgatgaagggaccaaacctgtcgaattttaaaatagggggaccaattctgcaaaataatgaaaatatggagac 43344813  T
Q  205 caaacatgcaattaagc 221  Q
    ||||  |||||||||||    
T  43344812 caaaattgcaattaagc 43344796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 9388911 - 9389054
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||  ||||| ||  |||| || |||  ||||||| | ||||||||||||  | |||||| ||||||| ||||| |||||||||| ||||     
T  9388911 atgttttaaatggtgtttttaagaaaatattcttatgatttcattgttgttgatattttctcgtcttcagatcatataccacggcatttaaaatctatct 9389010  T
Q  107 catcacatttttatagtt-caaaatatgatggagggatcaaaac 149  Q
    |||||| ||||| |||||  |||||||||| ||||||| |||||    
T  9389011 catcacttttttttagttaaaaaatatgatagagggataaaaac 9389054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 43344980 - 43344914
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatctt 73  Q
    ||||||||||||||||||| ||  ||| |||||||||||||||| |||||||||  |||||||||||    
T  43344980 atgttttaaatgaagtttttaaaaaaaatttgttacaatttcattgatgttgattgttttccatctt 43344914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 15061721 - 15061767
Alignment:
Q  163 aatagggggaccaattatgcaaaatgataaaaataaggggatcaaac 209  Q
    ||||||| |||||||| |||||||||||||||||| |||||||||||    
T  15061721 aatagggagaccaattttgcaaaatgataaaaatagggggatcaaac 15061767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 4e-55; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 38216199 - 38216412
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||| ||||||||||   ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  38216199 atgttttaaataaagttttcaagagaattttgttacaatttcattgatgttgatttttttccatcttcatatcatattccacaacatttaaaatttatca 38216298  T
Q  107 catcacatttttatagttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatc 205  Q
    | |||| ||||||| |||| |||||||||||||  || ||||| ||||||  || | |||||||||||||||||||||||||| | |||||| ||||| |    
T  38216299 cgtcacttttttattgttcaaaaatatgatggaatgaccaaaagtgtcgaattttaaaatagggggaccaattatgcaaaatggtgaaaatagggggacc 38216398  T
Q  206 aaacatgcaattaa 219  Q
    |||  |||||||||    
T  38216399 aaaactgcaattaa 38216412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 49726611 - 49726468
Alignment:
Q  10 ttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcacat 109  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||| |||    
T  49726611 ttttaaatgaagttttcaagaaaattttgttacaatttcatcgatgttgatctttttacatcttcaaattatattccacgacatttaaaatttatctcat 49726512  T
Q  110 cacatttttatagttcaaaatatgatggagggatcaaaactgtc 153  Q
    || |||||||||||||||||||||||||||||| ||||||||||    
T  49726511 catatttttatagttcaaaatatgatggagggaccaaaactgtc 49726468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 25189514 - 25189729
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||||||||   ||||| |||||||||| ||| ||||| || |||||||||||||| | ||||||  | ||||||||||||||||||    
T  25189514 atgttttaaatgaagttttcaagagaatttcgttacaattttatcaatgttcatctttttccatcttcacagcatattttatgacatttaaaatttatca 25189613  T
Q  107 catcacatttttatagtt-caaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatc 205  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||| ||  || | |||||||||||||||| ||||||||| |||||||| ||||| |    
T  25189614 catcacatttttatagttaaaaaatatgatggagggaccaaaactgttgaattttaaaatagggggaccaattctgcaaaatggtaaaaatagggggacc 25189713  T
Q  206 aaacatgcaattaagc 221  Q
    |||  |||||||||||    
T  25189714 aaaactgcaattaagc 25189729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 39450832 - 39450617
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatctt--catatcatattccacgacatttaaaatttat 104  Q
    ||||||||||||||||||||||   ||||| ||||||||||||| |||||||||  |||||||||||  | ||||||||| || |||||||||||||| |    
T  39450832 atgttttaaatgaagttttcaagagaatttggttacaatttcatagatgttgat--ttttccatcttatcttatcatatttcatgacatttaaaattttt 39450735  T
Q  105 cacatcacatttttatagttcaaaa-tatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataagggga 203  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |  || | |||||||||||||||| ||||||||| | |||||| |||||    
T  39450734 cacatcacatttttatagttcaaaaatatgatggagggatcaaaactgtcaaattttaaaatagggggaccaattctgcaaaatggtgaaaataggggga 39450635  T
Q  204 tcaaacatgcaattaagc 221  Q
      |||  |||||||||||    
T  39450634 caaaaactgcaattaagc 39450617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 43071754 - 43071571
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacattt-aaaatttatc 105  Q
    |||||||||| |||||||||||   |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| ||||||||||    
T  43071754 atgttttaaacgaagttttcaagagaattttgttacaatttcatcgatgttaatctttttccatcttcaaatcatattccacgacatttaaaaatttatc 43071655  T
Q  106 acatcacatttttatagttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatg 188  Q
    |||||||||||||||||||| |||||| ||| ||||| |||||||||| ||  || | ||||||||| | ||||||||||||||    
T  43071654 acatcacatttttatagttcaaaaatacgatcgaggggtcaaaactgttgaattttaaaatagggggcctaattatgcaaaatg 43071571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 39492402 - 39492593
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    |||||| ||||||||||||||| | ||||||||||||| |||||| |||||||| |||| ||||||||| || |||||||| ||||||||||||||||||    
T  39492402 atgtttcaaatgaagttttcaagggaattttgttacaacttcatcaatgttgatcttttaccatcttcaaattatattccatgacatttaaaatttatca 39492501  T
Q  107 catcacatttttatagttc-aaaatatgatggagggatcaaaactgtcg-atattaacaatagggggaccaattatgcaaaatgataaaaata 197  Q
    ||||||||  ||||||||| ||||||||||||||||| |||||||| || || |||| |||| ||||||||||| ||||||||| | ||||||    
T  39492502 catcacatacttatagttcaaaaatatgatggagggaccaaaactgacgaatgttaa-aatacggggaccaattctgcaaaatggtgaaaata 39492593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 38018445 - 38018311
Alignment:
Q  22 ttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcacatcacatttttata 121  Q
    ||||||| | |||||||||||||||||||||||||||||  ||||||||||||| | ||||||||| || |||||||||||||||| |||||||||||||    
T  38018445 ttttcaagggaattttgttacaatttcatcgatgttgatcgttttccatcttcagagcatattccatgatatttaaaatttatcacgtcacatttttata 38018346  T
Q  122 gttc-aaaatatgatggagggatcaaaactgtcga 155  Q
    |||| ||||||||||||||||| ||| | ||||||    
T  38018345 gttcaaaaatatgatggagggaccaagattgtcga 38018311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 432 - 525
Target Start/End: Complemental strand, 2812567 - 2812474
Alignment:
Q  432 gctatccaaattcttgtaatgtaaatgtatacataaacataagcaaatttatatatgatgtcttatgcaaaagtaaatcatctcatcttctttg 525  Q
    |||||||||||||||||| || ||||||||| ||||| || | |||||||||||| | |||||| | |||||| |||||||||||||| |||||    
T  2812567 gctatccaaattcttgtattgcaaatgtataaataaatatgaccaaatttatatacggtgtcttcttcaaaagcaaatcatctcatctcctttg 2812474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 14742167 - 14742052
Alignment:
Q  8 tgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcac 107  Q
    ||||||||||||||||||||| | ||||| |||||||||| |||||||||||| ||||    |||||   | | |||| | |||||||||||||||||||    
T  14742167 tgttttaaatgaagttttcaagggaatttcgttacaattttatcgatgttgatttttt----tcttc--tttagattctatgacatttaaaatttatcac 14742074  T
Q  108 atcacatttttatagttcaaaa 129  Q
    |||| |||||||||||| ||||    
T  14742073 atcaaatttttatagttaaaaa 14742052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 39933643 - 39933728
Alignment:
Q  14 aaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaa 99  Q
    |||||| |||||||| |||| ||| ||||||||||||||| |||||  |||| |||| |||||||||||| |||||| ||||||||    
T  39933643 aaatgaggttttcaaggaaaatttattacaatttcatcgacgttgagcttttcccattttcatatcatataccacgatatttaaaa 39933728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 39492340 - 39492282
Alignment:
Q  163 aatagggggaccaattatgcaaaatgataaaaataaggggatcaaacatgcaattaagc 221  Q
    |||||||||||||||| ||||||||||| |||||||||| | ||||  |||||||||||    
T  39492340 aatagggggaccaattttgcaaaatgatgaaaataagggaaccaaaactgcaattaagc 39492282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 1451924 - 1451850
Alignment:
Q  6 aatgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatat 83  Q
    |||||||||||||||||||| || || | | | |||||||||||||||| |||  ||||||||||| |||||||||||    
T  1451924 aatgttttaaatgaagtttttaa-gagaatattttacaatttcatcgatcttg--atttttccatcatcatatcatat 1451850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 1e-52; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 7 - 199
Target Start/End: Complemental strand, 35021184 - 35020992
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||||||||  |||||||||  |||||| |||||||||||| |||||| ||||||| |||||||||||| |||||||||||||||||    
T  35021184 atgttttaaatgaagttttcaagaaaattttgtcgcaattttatcgatgttgatctttttctatcttcagatcatattccacaacatttaaaatttatca 35021085  T
Q  107 catcacatttttatagttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataag 199  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||  || | ||||| ||||||| ||||| |||||| | ||||||||    
T  35021084 catcacatttttatagttcaaaaatatgatgga-ggatcaaaactgtcgaattttaaaatagagggaccatttatgtaaaatggtgaaaataag 35020992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 40609774 - 40609989
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||| || ||||||    |||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||| ||||||    
T  40609774 atgttttaaataaaattttcataagaattttgttacaatttcatcaatgttaatcttttttcatcttcatatcatattccacgacatttaaaagttatca 40609873  T
Q  107 catcacatttttatag-ttcaaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatc 205  Q
    |||||||||||||||| || ||||||||||||||||||||||||| || |  || | |||||||||||||||| || |||||  | |||||| | ||| |    
T  40609874 catcacatttttatagtttaaaaatatgatggagggatcaaaactctcaaattttaaaatagggggaccaattctgtaaaattgtgaaaataggaggacc 40609973  T
Q  206 aaacatgcaattaagc 221  Q
    |||  |||||||||||    
T  40609974 aaaactgcaattaagc 40609989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 10 - 173
Target Start/End: Original strand, 20586381 - 20586544
Alignment:
Q  10 ttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcacat 109  Q
    ||||||||||| |||| || |||| | | || | ||||||||||| ||||| |||||||||||| ||||||||| | |||||||||||||  ||||||||    
T  20586381 ttttaaatgaattttttaaggaaactatcttgcgatttcatcgatattgat-tttttccatctttatatcatatactacgacatttaaaacatatcacat 20586479  T
Q  110 cacatttttatagttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggggac 173  Q
    ||| ||||| |||||| |||||||||||||||| |||||||| || || || | |||||||||||    
T  20586480 cacctttttttagttcaaaaatatgatggagggttcaaaactatcaattttgaaaatagggggac 20586544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 35695422 - 35695514
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaa 99  Q
    |||||| ||||||||| ||||| |||||||| |||| ||||||||||||||||||||||  |  |||||||| |||| |||||||||||||||    
T  35695422 atgtttcaaatgaagtattcaaggaaattttcttacgatttcatcgatgttgatattttctcgccttcatattatataccacgacatttaaaa 35695514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 34922102 - 34922219
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||||| || | |||||| |||| |||| ||| |||||||| |     |||||||||||||||||||| ||||||||||| ||||||    
T  34922102 atgttttaaatgaagtttttaacgtaattttcttacgattttatcaatgttgatct-----catcttcatatcatattccaagacatttaaaacttatca 34922196  T
Q  107 catcacatttttatagttcaaaa 129  Q
    |||||| | ||| ||||| ||||    
T  34922197 catcacctatttttagttaaaaa 34922219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 1602783 - 1602852
Alignment:
Q  41 acaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcacatc 110  Q
    |||||||||||||||||||||| |||||||| ||| ||||||| |||   |||||||||  |||||||||    
T  1602783 acaatttcatcgatgttgatatgtttccatcatcacatcatataccaattcatttaaaacatatcacatc 1602852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 43227815 - 43227734
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccac 88  Q
    ||||||||||||||||||||||   |||||| | ||||||| ||||| ||| |||||| || ||| ||| ||||||| ||||    
T  43227815 atgttttaaatgaagttttcaagagaattttctaacaattttatcgaggtttatatttctcaatcatcagatcatataccac 43227734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 6e-51; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 20896385 - 20896519
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |||    
T  20896385 atgttttaaatgaagtttttaaagaaattttgttacaatttcatcgatgttgatatttttctatcttcacatcatattccatgacatttaaaatttctca 20896484  T
Q  107 catcacatttttatagttc-aaaatatgatggagg 140  Q
    ||||||||||||||||||| |||||||||||||||    
T  20896485 catcacatttttatagttcaaaaatatgatggagg 20896519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 29366563 - 29366348
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||| ||||||||||   |||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||||||||||    
T  29366563 atgttttaaataaagttttcaacataattttgttacaatttcatcgatgttgataatttttcatcttcaaatcatattccatgacatttaaaatttatca 29366464  T
Q  107 catcacatttttatagttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatc 205  Q
    |||||||||||||| |||| ||||||| ||| ||||| |||| || ||||  || | |||| ||||||||||| ||||||||  | |||||| ||||| |    
T  29366463 catcacatttttatggttcaaaaatataatgaagggaccaaacctatcgaattttaaaatatggggaccaattttgcaaaattgtgaaaatagggggacc 29366364  T
Q  206 aaacatgcaattaagc 221  Q
    |||  | |||||||||    
T  29366363 aaaactacaattaagc 29366348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 37327506 - 37327296
Alignment:
Q  10 ttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcacat 109  Q
    |||||||||||||||||||   ||||||||| |||||| ||||||||| || ||||| ||| |||| |||||||||||||||||||||||||||||||||    
T  37327506 ttttaaatgaagttttcaagagaattttgttgcaattttatcgatgttaatcttttttcattttcagatcatattccacgacatttaaaatttatcacat 37327407  T
Q  110 cacatttttatagttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatcaaa 208  Q
    ||||| |||||| ||| |||||||||| ||| || ||||| ||||||  || | ||||||||||||| || ||||||||| | |||||| ||||||||||    
T  37327406 cacatatttataattcaaaaatatgatagagagaccaaaattgtcgaattttaaaatagggggaccatttctgcaaaatggtgaaaatagggggatcaaa 37327307  T
Q  209 catgcaattaa 219  Q
      |||||||||    
T  37327306 actgcaattaa 37327296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 44857934 - 44858147
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    |||||||||||||||||||||| |||||||||||||| ||| |||||| ||||| |||||||||||| | |||||| ||||| | |||| ||||||||||    
T  44857934 atgttttaaatgaagttttcaaggaaattttgttacagttttatcgatcttgatgtttttccatctttagatcatactccacaatattt-aaatttatca 44858032  T
Q  107 catcacatttttatagttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatc 205  Q
    |||  |||||||||||||| ||||| |||| |||||| |||||||||| |  || | |||||||||||| ||| ||||||||| |||||||| |||||||    
T  44858033 cattgcatttttatagttcaaaaatttgatagagggaccaaaactgtcaaattttaaaatagggggacc-attttgcaaaatggtaaaaatagggggatc 44858131  T
Q  206 aaacatgcaattaagc 221  Q
    |||  |||||||||||    
T  44858132 aaaactgcaattaagc 44858147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 46303773 - 46303633
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||||| ||   |||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  46303773 atgttttaaatgaagtttt-aagataattttgttacagtttcatcgatgttgatctttttctatcttcatatcatattccacgacatttaaaatttatca 46303675  T
Q  107 catcacatttttatagttc-aaaatatgatggagggatcaaa 147  Q
    |||||||||||| |||||| ||||||||||||| ||| ||||    
T  46303674 catcacatttttgtagttcaaaaatatgatggaaggaccaaa 46303633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 23416004 - 23416148
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||||| ||  ||||||||||| ||||||||||||||||| ||||||||||| ||| || |||||||| ||||||||| |||||||     
T  23416004 atgttttaaatgaagtttttaagaaaattttgttataatttcatcgatgttgaaatttttccatcatcagattatattccatgacatttaagatttatct 23416103  T
Q  107 catcacatttttatagttcaaaatatgatggagggatcaaaactgtc 153  Q
     |||| ||||||||||||||||| || ||||||||| ||||||||||    
T  23416104 aatcatatttttatagttcaaaa-at-atggagggaccaaaactgtc 23416148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 42457528 - 42457402
Alignment:
Q  27 aatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcacatcacatttttatagtt-c 125  Q
    ||||||||||| ||||||||| || ||||||||| |||||| |||| |||| ||||||  |  |||||||||||||||||||||| ||||||||||||      
T  42457528 aatgaaattttattacaattttattgatgttgatctttttctatctccataccatattttataacatttaaaatttatcacatcatatttttatagttaa 42457429  T
Q  126 aaaatatgatggagggatcaaaactgt 152  Q
    ||||||||||||| |||||||||||||    
T  42457428 aaaatatgatggatggatcaaaactgt 42457402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 27569366 - 27569477
Alignment:
Q  44 atttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcacatcacatttttatagttcaaaatatgatggagggat 143  Q
    ||||||||||||||||||||||  | |||||| ||||||| |||||||||||||||| ||||||||||| ||||| ||||| |||||||||| ||||||     
T  27569366 atttcatcgatgttgatattttctcgtcttcagatcatataccacgacatttaaaatctatcacatcacgtttttttagttaaaaatatgatagagggag 27569465  T
Q  144 caaaactgtcga 155  Q
     | |||||||||    
T  27569466 aacaactgtcga 27569477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 3565582 - 3565460
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    |||||||||||||||||||||||| ||||||  ||  ||||||||||||||||||||||   ||||||| ||||| | ||||||| |||||||  |||||    
T  3565582 atgttttaaatgaagttttcaatgtaattttcctatgatttcatcgatgttgatattttcttatcttcaaatcatctaccacgacgtttaaaacctatca 3565483  T
Q  107 catcacatttttatagttcaaaa 129  Q
    |||||  ||||| ||||| ||||    
T  3565482 catcatctttttttagttaaaaa 3565460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 27567446 - 27567568
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||   ||||||| |||||||| |||| |||||||| ||||||||| |||  | |||||| ||||||| | | |||| ||||||| |||||    
T  27567446 atgttttaaatggtattttcaaggaaattttcttacgatttcatccatgttgatactttctcgtcttcagatcatatactatgacagttaaaatctatca 27567545  T
Q  107 catcacatttttatagttcaaaa 129  Q
    |||||| ||||| ||||| ||||    
T  27567546 catcacgtttttttagttaaaaa 27567568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 45871825 - 45871927
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||||| || | |||||| |||  ||| | ||||| |||| | |||| |||||||||||||||||| | |||||||||||  |||||    
T  45871825 atgttttaaatgaagtttttaaagtaattttcttatgattccgtcgatattgagactttttcatcttcatatcatattctaagacatttaaaacctatca 45871924  T
Q  107 cat 109  Q
    |||    
T  45871925 cat 45871927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 27567843 - 27567937
Alignment:
Q  126 aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatcaaacatgcaattaagc 221  Q
    |||||||||| |||||| ||||||||||||  || | ||||||||||||||||   | ||| ||| ||||| |||||||||||  |||||||||||    
T  27567843 aaaatatgatagagggaccaaaactgtcgaattttaaaatagggggaccaattccacgaaaagatgaaaat-aggggatcaaaactgcaattaagc 27567937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 1e-49; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 36632837 - 36632657
Alignment:
Q  18 gaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcacatcacatttt 117  Q
    ||||||||||| | |||||||||||||||||||||||||| || |||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  36632837 gaagttttcaaaggaattttgttacaatttcatcgatgttaatctttttctatcttcaaatcatattccacgacatttaaaatttatcacaccacatttt 36632738  T
Q  118 tatagttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaata 197  Q
    |||||||| |||||||||||||||||  |||| ||||||  || | ||||| || ||||||||||||||||  ||||||||    
T  36632737 tatagttcaaaaatatgatggagggagtaaaattgtcgaattttaaaatagaggaaccaattatgcaaaatcgtaaaaata 36632657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 3207736 - 3207941
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||          |||||| |||||||||||||||||    
T  3207736 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatattttttcatct----------ttccacaacatttaaaatttatca 3207825  T
Q  107 catcacatttttatagttcaa-aatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatc 205  Q
    |||||||||||||||||| || |||||||||||| || ||||||| ||||  || | |||||||||||||||| ||||||||  | |||||| |||||      
T  3207826 catcacatttttatagtttaagaatatgatggagtgaccaaaactatcgaattttaaaatagggggaccaattctgcaaaatagtgaaaatagggggaca 3207925  T
Q  206 aaacatgcaattaagc 221  Q
    |||  |||||||||||    
T  3207926 aaaagtgcaattaagc 3207941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 20771637 - 20771467
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||| | |||| |  ||||||||| |||||||||||||||||| |||||||||||| | ||||||||| ||||||||||||||||||||    
T  20771637 atgttttaaatgaagctatcaaggggattttgttataatttcatcgatgttgatctttttccatctttagatcatattctacgacatttaaaatttatca 20771538  T
Q  107 catcacatttttatagttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaa 176  Q
    ||||||||||||||||||| |||||| |||||||||  ||||| |||| |  || | ||||||||||||||    
T  20771537 catcacatttttatagttcaaaaatacgatggaggggccaaaattgtcaacttttaaaatagggggaccaa 20771467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 20781431 - 20781261
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||| | |||| |  ||||||||| |||||||||||||||||| |||||||||||| | ||||||||| ||||||||||||||||||||    
T  20781431 atgttttaaatgaagctatcaaggggattttgttataatttcatcgatgttgatctttttccatctttagatcatattctacgacatttaaaatttatca 20781332  T
Q  107 catcacatttttatagttc-aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaa 176  Q
    ||||||||||||||||||| |||||| |||||||||  ||||| |||| |  || | ||||||||||||||    
T  20781331 catcacatttttatagttcaaaaatacgatggaggggccaaaattgtcaacttttaaaatagggggaccaa 20781261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 7 - 178
Target Start/End: Original strand, 39186271 - 39186437
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||| ||      |||| |||||||||||||||||||||| |||||||||||||||    
T  39186271 atgttttaaatgaagtttttaaagaaattttgttacaatttcatcgatctt------tttctatcttcatatcatattccacgatatttaaaatttatca 39186364  T
Q  107 catcacatttttatagtt-caaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaatt 178  Q
    ||||||||||||||| ||  |||||| |||||||||| ||||||||||||  |||| ||||||| || |||||    
T  39186365 catcacatttttatacttaaaaaatacgatggagggaccaaaactgtcgaatttaaaaatagggagatcaatt 39186437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 38255269 - 38255482
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    |||||||||||||| ||||| | ||||||| |||||||||| ||||||| |||| |||||||||||  | ||||||||| |  | |||||||||||||||    
T  38255269 atgttttaaatgaaattttctaggaaatttcgttacaattttatcgatggtgatctttttccatctctagatcatattctaaaatatttaaaatttatca 38255368  T
Q  107 catcacatttttatagtt-caaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatc 205  Q
    ||| |||||||||| |||  ||||||||||| ||||| ||||||||||||  || | |||| ||||| ||||| | ||||| |||||||||||| ||| |    
T  38255369 cattacatttttatggttaaaaaatatgatgcagggaccaaaactgtcgaattttaaaatatggggatcaattctacaaaaggataaaaataagaggacc 38255468  T
Q  206 aaacatgcaattaa 219  Q
    |||  |||||||||    
T  38255469 aaaactgcaattaa 38255482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 24587220 - 24587353
Alignment:
Q  23 tttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcacatcacatttttatag 122  Q
    |||||| |||| |||||||||||||||||||||||||| ||||| |||||| |  ||| || |||| |||||||||||||||||||||||||||||||||    
T  24587220 tttcaaggaaagtttgttacaatttcatcgatgttgatcttttttcatctttaggtcacataccaccacatttaaaatttatcacatcacatttttatag 24587319  T
Q  123 ttc-aaaatatgatggagggatcaaaactgtcga 155  Q
    ||| |||||||||||||| || |||||| |||||    
T  24587320 ttcaaaaatatgatggagagaccaaaaccgtcga 24587353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 13267910 - 13268059
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    |||||||||||||||||||||| | |||||| |||  ||||||| ||||||||||||||   ||||| | |||||||  || |||||||||||  |||||    
T  13267910 atgttttaaatgaagttttcaaaggaattttcttatgatttcattgatgttgatattttattatctttagatcatatatcaagacatttaaaacctatca 13268009  T
Q  107 catcacatttttatagtt-caaaatatgatggagggatcaaaactgtcga 155  Q
    |||| ||||||| |||||  |||||||||||||||||   ||||||||||    
T  13268010 catcgcatttttttagttagaaaatatgatggagggactcaaactgtcga 13268059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 14954229 - 14954178
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttg 58  Q
    ||||||||||||||||| | ||  ||||||| ||||||||||||||||||||    
T  14954229 atgttttaaatgaagttattaagtaaattttcttacaatttcatcgatgttg 14954178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 32089240 - 32089182
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttt 65  Q
    ||||||||||||||||||| |   ||||||| |||| |||||||| |||||||||||||    
T  32089240 atgttttaaatgaagtttttatgaaaattttattacgatttcatcaatgttgatatttt 32089182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 3171003 - 3170959
Alignment:
Q  39 ttacaatttcatcgatgttgatatttttccatcttcatatcatat 83  Q
    |||||||||| | |||||||||||||| ||||| |||||||||||    
T  3171003 ttacaatttcgttgatgttgatattttcccatcatcatatcatat 3170959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 39186240 - 39186174
Alignment:
Q  132 tgatggagggatcaaaactgtcga--tattaacaatagggggaccaattatgcaaaatgataaaaata 197  Q
    |||| |||||||||||| ||||||  | |||| |||||||||||||||| ||||||||||| ||||||    
T  39186240 tgatagagggatcaaaattgtcgaagttttaa-aatagggggaccaattttgcaaaatgatgaaaata 39186174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 6e-42; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 2236949 - 2236811
Alignment:
Q  10 ttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcacat 109  Q
    |||||||||||||||| || ||| |||| ||||||||| |||||||||| | |||||| ||||||||||||||||| ||||| |||||||||||||||||    
T  2236949 ttttaaatgaagtttttaa-gaattttttttacaattttatcgatgttggtctttttctatcttcatatcatattcaacgacgtttaaaatttatcacat 2236851  T
Q  110 cacatttttatagttc-aaaatatgatggagggatcaaaa 148  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  2236850 cacatttttatagttcaaaaatatgatggagggatcaaaa 2236811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 28587827 - 28587613
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||||| || | |||||| || |||||| |||||| || | |||||  |||||||||||||||||||| |||||||||||  |||||    
T  28587827 atgttttaaatgaagtttttaacgtaattttctttcaattttatcgatttttacattttctcatcttcatatcatattccaagacatttaaaacctatca 28587728  T
Q  107 catcacatttttatagttcaaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaataaggggatca 206  Q
    |||||| | ||| ||||| |||||||||||||||||  |||||||||||  || | |||||||||||||| | ||||||||| | |||| | ||||| ||    
T  28587727 catcacctctttttagttaaaaatatgatggagggacgaaaactgtcgaattttaaaatagggggaccaaatttgcaaaatggtgaaaacagggggacca 28587628  T
Q  207 aacatgcaattaagc 221  Q
    ||  |||||||||||    
T  28587627 aaactgcaattaagc 28587613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 4838015 - 4837883
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||||||||   |||||||||||||||| ||   ||||||| ||||||||||| ||| ||||||| |||||||||||||||| ||||    
T  4838015 atgttttaaatgaagttttcaaatgaattttgttacaattttat---tgttgatctttttccatctacatgtcatatttcacgacatttaaaattcatca 4837919  T
Q  107 catcacatttttatagttc-aaaatatgatggaggg 141  Q
    ||||||||||||||||||| |||||||||| |||||    
T  4837918 catcacatttttatagttcaaaaatatgatagaggg 4837883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 6196820 - 6196934
Alignment:
Q  10 ttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcacat 109  Q
    ||||||||||||||||||| | ||||| |||| ||||||||  |||||||| |||||  ||  ||| |||||||||||||||||||||||||||||||||    
T  6196820 ttttaaatgaagttttcaagggaatttcgttataatttcattaatgttgatcttttttaatgatcagatcatattccacgacatttaaaatttatcacat 6196919  T
Q  110 cacatttttatagtt 124  Q
    ||||||| |||||||    
T  6196920 cacatttctatagtt 6196934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 10244501 - 10244328
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||||| || ||| |||| |||| ||||||||||||||||||||||  ||| |||| ||||||| | | |||||||||||  |||||    
T  10244501 atgttttaaatgaagtttttaaggaagttttcttacgatttcatcgatgttgatattttctcattttcagatcatatactaagacatttaaaacctatca 10244402  T
Q  107 catcacatttttatagttcaaa--atatgatggagggatcaaaactgtcgatattaacaatagggggaccaatt 178  Q
     ||||| | ||| ||||| |||  |||||||||| ||||||||||||||||  || | ||||||| ||||||||    
T  10244401 tatcacctctttttagttaaaaatatatgatggatggatcaaaactgtcgaactttaaaatagggagaccaatt 10244328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 33819922 - 33820007
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgaca 92  Q
    ||||||||||||||||||| || | |||||| |||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  33819922 atgttttaaatgaagtttttaagggaattttattacaatttcatcgatattgatctttttccatctttatatcatattccacgaca 33820007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 12480444 - 12480535
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaa 98  Q
    |||||| |||||||||||| || | |||| | |||| ||||||| || ||||||||||| | ||||||| ||||||| |||| |||||||||    
T  12480444 atgtttaaaatgaagtttttaaaggaattatcttacgatttcattgacgttgatattttcctatcttcaaatcatataccacaacatttaaa 12480535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 6198074 - 6198145
Alignment:
Q  126 aaaatatgatggagggatcaaaactgtcgatattaacaatagggggaccaattatgcaaaatgataaaaata 197  Q
    ||||||||||||||||| |||||||| |||  || | |||||||||||||||| | ||||||| | ||||||    
T  6198074 aaaatatgatggagggagcaaaactgacgaattttaaaatagggggaccaattctacaaaatggtgaaaata 6198145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 4838077 - 4838117
Alignment:
Q  163 aatagggggaccaattatgcaaaatgataaaaataagggga 203  Q
    ||||||||||||||||  |||||||||| ||||||||||||    
T  4838077 aatagggggaccaatttcgcaaaatgatgaaaataagggga 4838117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 20335 - 20485
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||  |||||| ||||||||     
T  20335 atgttttaaatgaaattttcaatgaaattttgttacaatttcatcaatgttgatctttttccatcttcagatcatattgcaccgcatttagaatttatct 20434  T
Q  107 ca-tcacatttttatagttc-aaaatatgatggagggatcaaaactgtcga 155  Q
    || ||| || |||||| ||| ||||||||||||| ||| | ||||||||||    
T  20435 cattcatatatttatatttcaaaaatatgatggaaggaccgaaactgtcga 20485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 30503 - 30653
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||  |||||| ||||||||     
T  30503 atgttttaaatgaaattttcaatgaaattttgttacaatttcatcaatgttgatctttttccatcttcagatcatattgcaccgcatttagaatttatct 30602  T
Q  107 ca-tcacatttttatagttc-aaaatatgatggagggatcaaaactgtcga 155  Q
    || ||| || |||||| ||| ||||||||||||| ||| | ||||||||||    
T  30603 cattcatatatttatatttcaaaaatatgatggaaggaccgaaactgtcga 30653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 17740 - 17595
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatattttt-ccatcttcatatcatattccacgacatttaaaatttatc 105  Q
    ||||||||||||||||||||||   | |||| |||| ||||||||||||||||| ||||| ||||||||  ||||||||  |||| ||||||||||||||    
T  17740 atgttttaaatgaagttttcaagatagttttattaccatttcatcgatgttgatcttttttccatcttcgaatcatattttacgatatttaaaatttatc 17641  T
Q  106 acatcacatttttatagtt-caaaatatgatggagggatcaaaact 150  Q
    ||||| ||||| |||||||  ||||||||||||| | |||||||||    
T  17640 acatcgcatttctatagttaaaaaatatgatggaagaatcaaaact 17595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 8947 - 9088
Alignment:
Q  7 atgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatca 106  Q
    ||||||||||||||||||||||  ||||||| ||||  ||||  ||| | |||||||||  ||| |||||||||||| |||||||||| ||||  |||||    
T  8947 atgttttaaatgaagttttcaagaaaattttcttacgttttcgccgacgatgatattttctcattttcatatcatataccacgacattcaaaacctatca 9046  T
Q  107 catca-catttttatagttcaaaatatgatggagggatcaaa 147  Q
    ||||| | ||||| ||||| ||||||| | ||||||| ||||    
T  9047 catcaccttttttttagttaaaaatataacggagggaccaaa 9088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0938 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0938
Description:

Target: scaffold0938; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 4079 - 3967
Alignment:
Q  45 tttcatcgatgttgatatttttccatcttcatatcatattccacgacatttaaaatttatcaca-tcacatttttatagttc-aaaatatgatggaggga 142  Q
    ||||||| |||||||| |||||||||||||| |||||||| |||  |||||| |||||||| || ||| || |||||| ||| ||||||||||||| |||    
T  4079 tttcatcaatgttgatctttttccatcttcagatcatattgcaccgcatttagaatttatctcattcatatatttatatttcaaaaatatgatggaagga 3980  T
Q  143 tcaaaactgtcga 155  Q
     | ||||||||||    
T  3979 ccgaaactgtcga 3967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 32406 - 32350
Alignment:
Q  163 aatagggggaccaattatgcaaaatgataaaaataaggggatcaaacatgcaattaagc 221  Q
    |||||||||||||||||||||||||||| |||   |||||||||||  |||||||||||    
T  32406 aatagggggaccaattatgcaaaatgatgaaa--taggggatcaaaattgcaattaagc 32350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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