View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16394_high_2 (Length: 503)

Name: NF16394_high_2
Description: NF16394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16394_high_2
NF16394_high_2
[»] chr4 (10 HSPs)
chr4 (1-487)||(33750085-33750571)
chr4 (1-154)||(33718945-33719098)
chr4 (9-154)||(33735618-33735763)
chr4 (1-142)||(33720976-33721117)
chr4 (310-399)||(33720746-33720835)
chr4 (310-421)||(33718672-33718783)
chr4 (310-395)||(33735359-33735444)
chr4 (182-249)||(33718850-33718917)
chr4 (173-239)||(33720864-33720930)
chr4 (173-226)||(33735540-33735593)
[»] chr7 (2 HSPs)
chr7 (84-136)||(6583050-6583102)
chr7 (84-136)||(6568891-6568943)
[»] chr6 (1 HSPs)
chr6 (93-139)||(13409875-13409921)
[»] chr1 (1 HSPs)
chr1 (90-148)||(44331866-44331925)


Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 33750571 - 33750085
Alignment:
Q  1 actcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33750571 actcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagc 33750472  T
Q  101 agcccatttaccccatggtctttgtctcactcctctgtacttcttcttagctctcnnnnnnnnnnnnnnnnnctcttctgggaagaaatcgcatcctaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||    
T  33750471 agcccatttaccccatggtctttgtctcactcctctgtacttcttcttagctctcttttgtttttgttttttctcttctgggaagaaatcgcatcctaag 33750372  T
Q  201 catcctgcaatgttgcattcctggcaggtttccatgttcgcaggtggaacaattctttctaannnnnnnnnnnnnnnnnntccgatggcgggatttggga 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||                  ||||||||||||||||||||    
T  33750371 catcctgcaatgttgcattcctggcaggtttctatgttcgcaggtggaacaattctttctaagctgctgctgctgctgcttccgatggcgggatttggga 33750272  T
Q  301 ggtgaaattcggtggaggtggagccggagacgacattggttaaggcagagacgatgacagagagttcttgatcggaagtgagtgtggtgggggagaagga 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||    
T  33750271 ggtgaaattcggtggaggtggagccggagacgacattggttaaggcagagacgatgacagagagttcttgatcggaggtgagtgtagtggcggagaagga 33750172  T
Q  401 agaagaggagtagttcatgttcatgtttgggaagtggcaggttgtttgtgttggagtttggaatgtttaaggtttagaagatttgat 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33750171 agaagaggagtagttcatgttcatgtttgggaagtggcaggttgtttgtgttggagtttggaatgtttaaggtttagaagatttgat 33750085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 33719098 - 33718945
Alignment:
Q  1 actcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagc 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    |||||||||||||||||||| |||||    
T  33719098 actcgatggcggcattgtcataagctctggcagcttcctccgccgtggtaaaggttccgagccaaacacgaacagcacgtctcgggtcacgaatctcagc 33718999  T
Q  101 agcccatttaccccatggtctttgtctcactcctctgtacttcttcttagctct 154  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||    
T  33718998 agcccattttccccatggtctctgtctcactcctctatacttctttttagctct 33718945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 33735763 - 33735618
Alignment:
Q  9 gcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatt 108  Q
    ||||||||||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||||   |||||||| ||||||||||| |||||||||||||    
T  33735763 gcagcattgtcgtaagctctggcagcttcctccgccgtggtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccatt 33735664  T
Q  109 taccccatggtctttgtctcactcctctgtacttcttcttagctct 154  Q
    | |||||||| || || |||||||||||||||||||||||||||||    
T  33735663 ttccccatggcctctgcctcactcctctgtacttcttcttagctct 33735618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 33721117 - 33720976
Alignment:
Q  1 actcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagc 100  Q
    ||||||| || |||||||| |||||||| ||||||||||||||||||| ||| ||||| |||||||||||    |||||||||||||||||||| |||||    
T  33721117 actcgatagcggcattgtcgtaagctctagcagcttcctccgccgtggtaaaggttccaagccaaacacgaaccgcacgtctcgggtcacgaatctcagc 33721018  T
Q  101 agcccatttaccccatggtctttgtctcactcctctgtactt 142  Q
    ||||||||| ||||||||||| || |||||||||||||||||    
T  33721017 agcccattttccccatggtctctgcctcactcctctgtactt 33720976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 399
Target Start/End: Complemental strand, 33720835 - 33720746
Alignment:
Q  310 cggtggaggtggagccggagacgacattggttaaggcagagacgatgacagagagttcttgatcggaagtgagtgtggtgggggagaagg 399  Q
    ||||||||||||| |||||||| || ||||||| ||||| ||||||||| ||||||||||||||||| ||||| ||||| | ||||||||    
T  33720835 cggtggaggtggaaccggagactacgttggttagggcagcgacgatgactgagagttcttgatcggaggtgagggtggtagtggagaagg 33720746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 421
Target Start/End: Complemental strand, 33718783 - 33718672
Alignment:
Q  310 cggtggaggtggagccggagacgacattggttaaggcagagacgatgacagagagttcttgatcggaagtgagtgtggtgggggagaaggaagaagagga 409  Q
    |||| |||||||||||||||||||| ||||||| ||| | ||| ||||| ||  ||||||||||||| | ||| |||| || ||||||||| ||||||||    
T  33718783 cggttgaggtggagccggagacgactttggttagggcggtgacaatgacggattgttcttgatcggaggggagagtggaggaggagaaggaggaagagga 33718684  T
Q  410 gtagttcatgtt 421  Q
    || |||||||||    
T  33718683 gttgttcatgtt 33718672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 395
Target Start/End: Complemental strand, 33735444 - 33735359
Alignment:
Q  310 cggtggaggtggagccggagacgacattggttaaggcagagacgatgacagagagttcttgatcggaagtgagtgtggtgggggag 395  Q
    |||||||||||||||||||||| || |||||||| ||||  |||||| | ||||||||||||||||| ||||| | || |||||||    
T  33735444 cggtggaggtggagccggagactacgttggttaaagcagcaacgatggcggagagttcttgatcggaggtgagagcggcgggggag 33735359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 33718917 - 33718850
Alignment:
Q  182 gaagaaatcgcatcctaagcatcctgcaatgttgcattcctggcaggtttccatgttcgcaggtggaa 249  Q
    |||||||| ||||||||| |||||||| |||||||||||  ||||||||||||||||||  |||||||    
T  33718917 gaagaaattgcatcctaaacatcctgctatgttgcattcgcggcaggtttccatgttcgttggtggaa 33718850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 33720930 - 33720864
Alignment:
Q  173 ctcttctgggaagaaatcgcatcctaagcatcctgcaatgttgcattcctggcaggtttccatgttc 239  Q
    |||||| |||||||||| ||||||||| |||||||| |||||||||||| | |||||||| ||||||    
T  33720930 ctcttcagggaagaaattgcatcctaaacatcctgctatgttgcattcccgacaggtttctatgttc 33720864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 33735593 - 33735540
Alignment:
Q  173 ctcttctgggaagaaatcgcatcctaagcatcctgcaatgttgcattcctggca 226  Q
    |||||| |||||||||| ||||||||| |||||||| |||||||||||| ||||    
T  33735593 ctcttcagggaagaaattgcatcctaaacatcctgctatgttgcattcccggca 33735540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 6583102 - 6583050
Alignment:
Q  84 gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct 136  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||||||||    
T  6583102 gggtcacgtatttcagctgcccattttccccatggtctttgtctcactcctct 6583050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 6568943 - 6568891
Alignment:
Q  84 gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct 136  Q
    |||||||| |||||||| |||||||| ||||||||||| ||||||||||||||    
T  6568943 gggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctct 6568891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 13409921 - 13409875
Alignment:
Q  93 atttcagcagcccatttaccccatggtctttgtctcactcctctgta 139  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||    
T  13409921 atttctgctgcccattttccccatggtctttgtctcactcctctgta 13409875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 44331866 - 44331925
Alignment:
Q  90 cgaatttcagcagcccatttaccccatggtctttgtctcactcctctgta-cttcttctt 148  Q
    |||||||| || |||||||| ||||||||||| ||||| ||||||||||| |||||||||    
T  44331866 cgaatttctgctgcccattttccccatggtctctgtcttactcctctgtatcttcttctt 44331925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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