View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16394_high_3 (Length: 359)
Name: NF16394_high_3
Description: NF16394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16394_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 31946519 - 31946764
Alignment:
| Q |
14 |
agatcaagagtagtgctgtatgccgacggacaaagcagaacaaacgaacttagttgtgaaaggatggttactcatttactatacttagggaaacatcctc |
113 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31946519 |
agatcaagagtagtgctgtatgctgacggataaagcagaacaaacgaacttagttgtgaaaggatggttactcatttactatacttagggaaacatcctc |
31946618 |
T |
|
| Q |
114 |
aacacatgaactctatgctgaatgggacattatgtgagatttatggcaatctaagttggaataatcgttctgtcacacnnnnnnnnnccaacaaggatta |
213 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| |
|
|
| T |
31946619 |
aacacatgaaccctatgctgaatgggacattatgtgagatttatggcaatctaagttggaacaatcgttctgtcacacaaaaaaaaaccaataaggatta |
31946718 |
T |
|
| Q |
214 |
atgttaaggtaaagtctgatttagagagaaattagattctctctag |
259 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31946719 |
atgtcaaggtaaagtctgatttagagagaaattagattctctctag |
31946764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 31948156 - 31948334
Alignment:
| Q |
14 |
agatcaagagtagtgctgtatgccgacggacaaagcagaacaaacgaacttagttgtgaaaggatggttactcatttactatacttagggaaacatcctc |
113 |
Q |
| |
|
||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
31948156 |
agatcaagagttgtgttgtatgctgacggacaaagcagaacaaacgaacttagttgtgaaaggatggttactcatttactatatttatggaaacatcctc |
31948255 |
T |
|
| Q |
114 |
aacacatgaactctatgctgaatgggacattatgtg-agatttatggcaatctaagttggaataatcgttctgtcacac |
191 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||| |||||||||| |||||||||||||| ||| |||||||||||| |
|
|
| T |
31948256 |
aacacatgaaccctatgttgaatgggacattatgtgaagatttatggtaatctaagttggaacaatggttctgtcacac |
31948334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 31948354 - 31948415
Alignment:
| Q |
203 |
aacaaggattaatgttaaggtaaagtctgatttagagagaaattagattctctctagcagaa |
264 |
Q |
| |
|
||||||||||||||| || |||||||||| || ||||| |||||||||||||||||| |||| |
|
|
| T |
31948354 |
aacaaggattaatgtcaaagtaaagtctgtttgagagaaaaattagattctctctagtagaa |
31948415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 31946824 - 31946864
Alignment:
| Q |
319 |
ctatcgtgtttgatggtcgagatgttgcaattgacggaaat |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31946824 |
ctatcgtgtttgatggtcgagatgttgcaattgatggaaat |
31946864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 31948472 - 31948512
Alignment:
| Q |
319 |
ctatcgtgtttgatggtcgagatgttgcaattgacggaaat |
359 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31948472 |
ctatcgtgtttgatggtcgagatgttacaattgacggaaat |
31948512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University