View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16394_low_2 (Length: 276)
Name: NF16394_low_2
Description: NF16394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16394_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 13239678 - 13239925
Alignment:
| Q |
13 |
aatatgtaaactcatgtcaggatttagatgtggctgatgtagctattatttcatttgtctatatatagaagaaaatgtagttaatcataaaaatatatgt |
112 |
Q |
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| T |
13239678 |
aatatgtaaactcatgtcaggatttagatgtggctgatgtagctattatttcatttgtctatatatagaagaaaatgtagttaatcataaaaatatatgt |
13239777 |
T |
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| Q |
113 |
agtcagaagtgcatttagaaaaaggtagttaagtgcattaagaagttaacaactcactgcatggtttgagttttcatnnnnnnncatgggcatatttaat |
212 |
Q |
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| T |
13239778 |
agtcagaagtgcatttagaaaaaggtagttaagtgcattaagaagttaacaactcactgcatggtttgagttttca-gaaaaaacatgggcatatttaat |
13239876 |
T |
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| Q |
213 |
acaaaatttgtattatgcattcttaaacatgtactcttatgatacatgt |
261 |
Q |
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|||||||||||||||||||||||| || |||||| |||||||||||||| |
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| T |
13239877 |
acaaaatttgtattatgcattcttcaatatgtacccttatgatacatgt |
13239925 |
T |
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