View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16394_low_3 (Length: 232)
Name: NF16394_low_3
Description: NF16394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16394_low_3 |
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| [»] scaffold0070 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 65 - 183
Target Start/End: Original strand, 25488987 - 25489105
Alignment:
| Q |
65 |
catatgaggaattgtttaatgcaaaagccagttttcttataaccaagaataaaaataaatcctttgtctcatcttactatagttcttacctcttaaatag |
164 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25488987 |
catatgaggaattgtttaatgcaaaactcagttttcttataaccaagaatcaaaataaatcctttgtctcatcttactatagttcttacctcttaaatag |
25489086 |
T |
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| Q |
165 |
taacttatactgttcttgt |
183 |
Q |
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||||||||||||||||||| |
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| T |
25489087 |
taacttatactgttcttgt |
25489105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 25385112 - 25385234
Alignment:
| Q |
68 |
atgaggaattgtttaatgcaaaagccagttttcttataaccaagaataaaaataaatcctttgtctcatcttactatagttc-------ttacctcttaa |
160 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
25385112 |
atgaggaattgtttaatgcaaaactcagttttcttataaccaagaataaaaataaatcctttgtctcatcttactatagttcttatatattatctcttaa |
25385211 |
T |
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| Q |
161 |
atagtaacttatactgttcttgt |
183 |
Q |
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|||| |||||||||||||||||| |
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| T |
25385212 |
atagaaacttatactgttcttgt |
25385234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 25603027 - 25603102
Alignment:
| Q |
65 |
catatgaggaattgtttaatgcaaaagccagttttcttataaccaagaataaaaataaatcctttgtctcatctta |
140 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
25603027 |
catatgaggaattgtttaatgcaaaagccagtattcttgcaaccaagaataaaaataaatcctttctctcatctta |
25603102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 25799402 - 25799475
Alignment:
| Q |
65 |
catatgaggaattgtttaatgcaaaagccagttttcttataaccaagaataaaaataaatcctttgtctcatct |
138 |
Q |
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||||||| |||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25799402 |
catatgatgaattgtttaatacaaaagtcagttttcttataaccatgaataaaaataaatcctttgtctcatct |
25799475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 18623 - 18540
Alignment:
| Q |
65 |
catatgaggaattgtttaatgcaaaagccagttttcttataaccaagaataaaaataaatcctttgtctcatcttactatagtt |
148 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18623 |
catatgaagaattgtgtaatgcaaaagccagttttcttataaccatgaataaaaataaatcctttgtctcatcttactatagtt |
18540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 38219 - 38146
Alignment:
| Q |
65 |
catatgaggaattgtttaatgcaaaagccagttttcttataaccaagaataaaaataaatcctttgtctcatct |
138 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38219 |
catatgatgaattgtttaatgcaaaagtcagttttcttataaccatgaataaaaataaatcctttgtctcatct |
38146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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