View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_high_1 (Length: 802)
Name: NF16395_high_1
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 37023495 - 37022933
Alignment:
| Q |
1 |
tgttatagcatcatgtaccagcactgaaataaatgcgaatcaattacattaaataacaaatattaccagaaagaagaagaagnnnnnnnnntgaaaggtt |
100 |
Q |
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| T |
37023495 |
tgttatagcatcatgtaccagcactgaaataaatgcgaatcaattacattaaataacaaatattaatagaaagaaaa--------------tgaaaggtt |
37023410 |
T |
|
| Q |
101 |
cgaaattggaagaaaatagagtaaattaatcaacataaccagtgatttataatttactaaatatggattgatttgatttagtacctgatgaccaaaacaa |
200 |
Q |
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| T |
37023409 |
cgaaattggaagaaaatagagtaaattaatcaacataaccagtgatttataatttactaaatatggattgatttgatttagtacctgatgaccaaaacaa |
37023310 |
T |
|
| Q |
201 |
atgccaaggattttcttgttcatatcattcaatttcttgagcaaattgagaagttgagaaacccatgtatcatttccatgtgcatcactacaactaccag |
300 |
Q |
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| T |
37023309 |
atgccaaggattttcttgttcatatcattcaatttcttaagcaaattgagaagttgagagacccatgtatcatttccatgtgcatcactacaactaccag |
37023210 |
T |
|
| Q |
301 |
tgatcacaaacccatcatacagattcaaatcttcatcatctggaaactcaccacgcgccaccttatacacatcccagctttcaccttcttcctccaacat |
400 |
Q |
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| T |
37023209 |
tgatcacaaacccatcatacagattcaaatcttcatcatctggaaactcaccacgcgccaccttatacacatcccagctttcaccttcttcctccaacat |
37023110 |
T |
|
| Q |
401 |
tctcacaaataccccaaaataccctccgtacattttcttcacatattctgaatcatctgcacataacaacaccccaaatctcttcccactcccacccatt |
500 |
Q |
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| T |
37023109 |
tctcacaaataccccaaaataccctccgtacattttcttcacatattctgaatcatctgcacataacaacaccccaaatctcttcccactcccacccatt |
37023010 |
T |
|
| Q |
501 |
ttctccatccttaaaagatttgatttttgattctgggtttctccggtccggtgatgctttctccctctaaaaatgtt |
577 |
Q |
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| T |
37023009 |
ttctccatccttaaaagatttgatttttgattctgggtttctcctgtccggtgatgcttcctccctctaaaaatgtt |
37022933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 638 - 796
Target Start/End: Complemental strand, 37022879 - 37022721
Alignment:
| Q |
638 |
ggaattgtttttggatacttagttttgagattgagaatgaggatgacaacgttgttgttttaaagggtggttttttgagaaagggcatgatttgttgtgt |
737 |
Q |
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| T |
37022879 |
ggaattgtttttggatacttagttttgagattgagaatgaggatgacaacgttgttgttttaaagggtggttttttgagaaagggcatgatttgttgtgt |
37022780 |
T |
|
| Q |
738 |
tatttacaacgttgtccttggtctaattccacgtcaaagtgacccttgatgatgtccat |
796 |
Q |
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| T |
37022779 |
tatttacaacgttgtccttggtctaattccacgtcaaagtgacccttgattatgaccat |
37022721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 270 - 484
Target Start/End: Original strand, 35904892 - 35905106
Alignment:
| Q |
270 |
tcatttccatgtgcatcactacaactaccagtgatcacaaacccatcatacagattcaaatcttcatcatctggaaactcaccacgcgccaccttataca |
369 |
Q |
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| T |
35904892 |
tcatttccataagcatcattacaactaccagtgatcacaaacccatcataaagactcaactcatcatccttaggaaactctccacatgaaactttgtaca |
35904991 |
T |
|
| Q |
370 |
catcccagctttcaccttcttcctccaacattctcacaaataccccaaaataccctccgtacattttcttcacatattctgaatcatctgcacataacaa |
469 |
Q |
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| T |
35904992 |
tgtcccatgtctcattttcttcctccaacattttcaagaatacaccagaataccctccatgcatctttatcacatactctgaatcctctgcacataacaa |
35905091 |
T |
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| Q |
470 |
caccccaaatctctt |
484 |
Q |
| |
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| T |
35905092 |
cacaccaaatctctt |
35905106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 33618140 - 33618075
Alignment:
| Q |
272 |
atttccatgtgcatcactacaactaccagtgatcacaaacccatcatacagattcaaatcttcatc |
337 |
Q |
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| T |
33618140 |
atttccataggcatcactgcaactaccagtgatcacaaacccatcatagagactcaattcatcatc |
33618075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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