View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16395_high_10 (Length: 442)

Name: NF16395_high_10
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16395_high_10
NF16395_high_10
[»] chr3 (9 HSPs)
chr3 (1-423)||(22749935-22750358)
chr3 (3-96)||(22740789-22740882)
chr3 (3-95)||(22726945-22727037)
chr3 (1-95)||(22739944-22740038)
chr3 (31-72)||(3010328-3010369)
chr3 (31-72)||(3035714-3035755)
chr3 (379-423)||(22726601-22726645)
chr3 (379-423)||(22740372-22740416)
chr3 (379-423)||(22741150-22741194)
[»] chr5 (4 HSPs)
chr5 (1-104)||(14372717-14372820)
chr5 (3-105)||(41438377-41438479)
chr5 (3-105)||(41451546-41451648)
chr5 (18-105)||(14240537-14240624)
[»] scaffold0196 (1 HSPs)
scaffold0196 (3-73)||(13483-13553)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-73)||(7947-8019)
[»] chr6 (4 HSPs)
chr6 (1-73)||(11672961-11673033)
chr6 (3-73)||(11663913-11663983)
chr6 (24-73)||(11709504-11709553)
chr6 (3-73)||(11631069-11631139)
[»] chr8 (3 HSPs)
chr8 (15-94)||(2301269-2301348)
chr8 (15-94)||(2325488-2325567)
chr8 (21-75)||(5282655-5282709)


Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 22750358 - 22749935
Alignment:
Q  1 ttgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggtaactca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22750358 ttgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggtaactca 22750259  T
Q  101 ttttcaattttactttttattgtttacaacatagaccatgcaaatagcctatttcttaaacacttatgaaatacgaagcaccgacacaaacaagggattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22750258 ttttcaattttactttttattgtttacaacatagaccatgcaaatagcctatttcttaaacacttatgaaatacgaagcaccgacacaaacaagggattg 22750159  T
Q  201 acactgacatgcagacactagtgataatttgaatatatgaaagttattgaacgtaaccacatatgtcagtgcctgacaccgacacacgtgggtgctacat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22750158 acactgacatgcagacactagtgataatttgaatatatgaaagttattgaacgtaaccacatatgtcagtgcctgacaccgacacacgtgggtgctacat 22750059  T
Q  301 tgcttctgaaatgtgg-nnnnnnnatagcacgatccttgtatatgacaggaatgcttgctgaaacttttaagttcgaagacagtgatctatgtcacacat 399  Q
    ||||||||||||||||        |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22750058 tgcttctgaaatgtggtttttcttatagcacgatccttgtatataacaggaatgcttgctgaaacttttaagttcaaagacagtgatctatgtcacacat 22749959  T
Q  400 caagtagagttcttacctgctgct 423  Q
    ||||||||||||||||||||||||    
T  22749958 caagtagagttcttacctgctgct 22749935  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 22740789 - 22740882
Alignment:
Q  3 gctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggtaa 96  Q
    ||||||||| | || ||||||||||||||||||||  | |||||||| ||||||||  ||||||||||||||||||| ||||| ||||||||||    
T  22740789 gctcgtgctctttaccaagatgctgatatatatctgctcgatgatccctttagtgcagttgatgctcatacaggatcccatctctttaaggtaa 22740882  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 22727037 - 22726945
Alignment:
Q  3 gctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggta 95  Q
    ||||||||| | || ||||||||||||||||||||  | || ||||| ||||||||  ||||||||||||||||||| ||||| |||||||||    
T  22727037 gctcgtgctctttaccaagatgctgatatatatctgctcgacgatccctttagtgcagttgatgctcatacaggatcccatctctttaaggta 22726945  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 22739944 - 22740038
Alignment:
Q  1 ttgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggta 95  Q
    ||||||||||| | || ||| |||||||||| |||||  | || ||||| ||||||||  ||||||||||||||||||| ||||| |||||||||    
T  22739944 ttgctcgtgctctttaccaaaatgctgatatttatctgctcgacgatccctttagtgcagttgatgctcatacaggatcccatctctttaaggta 22740038  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 3010369 - 3010328
Alignment:
Q  31 tatatctatttgatgatccgtttagtgctcttgatgctcata 72  Q
    ||||| ||||||||||||| || |||||||||||||||||||    
T  3010369 tatatatatttgatgatcctttgagtgctcttgatgctcata 3010328  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 3035755 - 3035714
Alignment:
Q  31 tatatctatttgatgatccgtttagtgctcttgatgctcata 72  Q
    ||||| ||||||||||||| || |||||||||||||||||||    
T  3035755 tatatatatttgatgatcctttgagtgctcttgatgctcata 3035714  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 423
Target Start/End: Complemental strand, 22726645 - 22726601
Alignment:
Q  379 acagtgatctatgtcacacatcaagtagagttcttacctgctgct 423  Q
    |||||||||||| | ||||||||||||||||| ||||||| ||||    
T  22726645 acagtgatctatataacacatcaagtagagtttttacctgatgct 22726601  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 22740372 - 22740416
Alignment:
Q  379 acagtgatctatgtcacacatcaagtagagttcttacctgctgct 423  Q
    |||||||| ||| | ||||||||||||||||||||||||| ||||    
T  22740372 acagtgatatatataacacatcaagtagagttcttacctgatgct 22740416  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 22741150 - 22741194
Alignment:
Q  379 acagtgatctatgtcacacatcaagtagagttcttacctgctgct 423  Q
    |||||||| ||| | ||||||||||||||||||||||||| ||||    
T  22741150 acagtgatatatataacacatcaagtagagttcttacctgatgct 22741194  T

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Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 14372717 - 14372820
Alignment:
Q  1 ttgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggtaactca 100  Q
    ||||||| ||| | || |||||||||||||||||||||||||||||||| ||||||||  | |||||||||||||||||||| || ||||||||||||||    
T  14372717 ttgctcgcgctctttaccaagatgctgatatatatctatttgatgatccttttagtgccgtggatgctcatacaggatctcacctttttaaggtaactca 14372816  T
Q  101 tttt 104  Q
    ||||    
T  14372817 tttt 14372820  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 41438479 - 41438377
Alignment:
Q  3 gctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggtaactcatt 102  Q
    ||||||||| | || |||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||| |||||||| || ||||||||||||||||    
T  41438479 gctcgtgctctttaccaagatgctgatatctatctatttgatgatccttttagtgctgtggatgctcatacgggatctcacctttttaaggtaactcatt 41438380  T
Q  103 ttc 105  Q
    |||    
T  41438379 ttc 41438377  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 41451648 - 41451546
Alignment:
Q  3 gctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggtaactcatt 102  Q
    ||||||||| | || |||||||||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||| || |||||||||| |||||    
T  41451648 gctcgtgctctttaccaagatgctgatatctatctatttgacgatccttttagtgctgttgatgctcatacaggatctcacctttttaaggtaattcatt 41451549  T
Q  103 ttc 105  Q
    |||    
T  41451548 ttc 41451546  T

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Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 14240624 - 14240537
Alignment:
Q  18 caagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggtaactcattttc 105  Q
    |||||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||||||||| || ||||||||||| |||||||    
T  14240624 caagatgctgatatctatctatttgatgatccttttagtgctgtggatgctcatacaggatctcacctttttaaggtaacccattttc 14240537  T

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Target: scaffold0196 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 13483 - 13553
Alignment:
Q  3 gctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatac 73  Q
    ||||||||||| ||| |  ||||||||||||||||||| |||||||| ||||||||| |||||||||||||    
T  13483 gctcgtgctttttatgagaatgctgatatatatctattggatgatccatttagtgctgttgatgctcatac 13553  T

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Target: scaffold0019 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 8019 - 7947
Alignment:
Q  1 ttgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatac 73  Q
    ||||||||||| | |||||  ||||||||||||||||||| |||||||| ||||||||| ||||||| |||||    
T  8019 ttgctcgtgctctttatcagaatgctgatatatatctattagatgatccatttagtgctgttgatgcgcatac 7947  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 11673033 - 11672961
Alignment:
Q  1 ttgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatac 73  Q
    ||||||||||| | |||||| |||||||| |||||||||| |||||||| ||||||||| ||||||| |||||    
T  11673033 ttgctcgtgctctctatcaaaatgctgatttatatctattggatgatccatttagtgctgttgatgcgcatac 11672961  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 11663913 - 11663983
Alignment:
Q  3 gctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatac 73  Q
    ||||||||| | |||||  |||||||||||||||| || |||||||| ||||||||| ||||||| |||||    
T  11663913 gctcgtgctctttatcagaatgctgatatatatctcttggatgatccatttagtgctgttgatgcacatac 11663983  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 11709553 - 11709504
Alignment:
Q  24 gctgatatatatctatttgatgatccgtttagtgctcttgatgctcatac 73  Q
    |||||||||||||| || |||||||||||||||||| ||||||| |||||    
T  11709553 gctgatatatatctcttggatgatccgtttagtgctgttgatgcacatac 11709504  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 11631139 - 11631069
Alignment:
Q  3 gctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatac 73  Q
    ||||||||| | |||||  ||||||| ||||||||||| |||||||| ||||| ||| ||||||| |||||    
T  11631139 gctcgtgctctttatcagaatgctgacatatatctattggatgatccatttagcgctgttgatgcacatac 11631069  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 2301269 - 2301348
Alignment:
Q  15 tatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggt 94  Q
    |||||||||||||| ||||| || ||||||||||| ||||||||| | ||||||||||| ||  |||| || ||||||||    
T  2301269 tatcaagatgctgacatatacctttttgatgatccttttagtgctgtcgatgctcatactggcactcacctctttaaggt 2301348  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 2325488 - 2325567
Alignment:
Q  15 tatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggt 94  Q
    |||||||||||||| ||||| || ||||||||||| ||||||||| | ||||||||||| ||  |||| || ||||||||    
T  2325488 tatcaagatgctgacatatacctttttgatgatccttttagtgctgtcgatgctcataccggcactcacctctttaaggt 2325567  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 5282709 - 5282655
Alignment:
Q  21 gatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacag 75  Q
    ||||||||||| |||||  |||||||||| ||||||||  |||||||||||||||    
T  5282709 gatgctgatatttatctccttgatgatccttttagtgcagttgatgctcatacag 5282655  T

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