View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_high_11 (Length: 422)
Name: NF16395_high_11
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 230 - 405
Target Start/End: Complemental strand, 29821610 - 29821435
Alignment:
| Q |
230 |
cctgattcatctataaacacaataatatggtgcaccatttacacattatcttgtctcaaacactgtcactgttaaaagcagcatacataaaataacacag |
329 |
Q |
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| T |
29821610 |
cctgattcatctataaacacaataatatggtgcaccatttacacattatcttgtctcaaacactgtcactgttaaaagcagcatacataaaataacacag |
29821511 |
T |
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| Q |
330 |
ctaccacagtacaaactagaaggttgtgccaattattgaacaaatggcaacattcactatatgtgaagcatcttct |
405 |
Q |
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| T |
29821510 |
ctaccacagtacaaactagaaggttgtgccaattattgaacaaatggcaacattcactatatgtgaagcatcttct |
29821435 |
T |
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Target: chr7; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 29821890 - 29821701
Alignment:
| Q |
10 |
attattctgacacatttttaccacacttaaaa-ttcatcaacggacgccgaaagnnnnnnngctacatggggaggaggaagaagctttggatatggtgga |
108 |
Q |
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| T |
29821890 |
attattctggcacatttttaccacacttaaaagttcatcaacggacgccgaaagaaaaaaagctacatggggaggaggaagaagctttggatatggtgga |
29821791 |
T |
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| Q |
109 |
gaga--actcaaaatattacttattaatcaatactacacaagtgatagatacagttcatggtgtaccaataacattagtctccagattca |
196 |
Q |
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| T |
29821790 |
gagataactcaaaatattacttattaatcaatactacacaagtgatagatacagttcatggtgtaccaataacattagtctccagattca |
29821701 |
T |
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