View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16395_high_12 (Length: 420)
Name: NF16395_high_12
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 410
Target Start/End: Original strand, 17025157 - 17025536
Alignment:
| Q |
19 |
acaatcaacaaaaagcttatcagttagatctacttca--ctagcttgctgccttggttatattatgcataggtataatgttctatatatagtacaaatat |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17025157 |
acaatcaacaaaaagcttatcagctagatctgattcatgctagcttgctgccttggttatattatgcataggtataatgttctatatatagtacaaatat |
17025256 |
T |
|
| Q |
117 |
atattgtcttcaaggtagaaagatacttggatattagtttgtccatgcataaagttaattttccatcaatgaaaaatgaacatagtcataatgtttgaca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17025257 |
atattgtcttcaaggtagaaagatacttggatattagtttgtcaatgcataaagttaattttccatcaatgaaaaatgaacatagtcataatgtttgaca |
17025356 |
T |
|
| Q |
217 |
ataggtgatgaaatgaaaataatattcttcttgtgatgtcccataactgtaaagtgcttaaaattttcaaaatctaagaaaaggtcccaaacatatttga |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
17025357 |
ataggtgatgaaatgaaaataatattcttcttgtgatgtcccataactgtaaagtgcttaaaattttcaaaatctaagaaaaggtcctaaacgtatttga |
17025456 |
T |
|
| Q |
317 |
ttccatttaacacttgcgtgatatttgcatctttaaacatgtatggaagaacataatgtggctactcgatgttggaatgtctcatttccctttg |
410 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17025457 |
ttccatttgacacttgcgtgatatttgc--------------atggaagaacataatgtggctactcgatgttggaatgtctcatttccctttg |
17025536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 410
Target Start/End: Original strand, 17002764 - 17003135
Alignment:
| Q |
19 |
acaatcaacaaaaagcttatcagttagatctacttcactagcttgctgccttggttatattatgcataggtataatgttctatatatagtacaaatatat |
118 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||||||||||||||||||||||| || || ||||| || | ||| ||||||||||||| ||| |
|
|
| T |
17002764 |
acaatcaacataaagctaatcagctagatctacttcactagcttgctgccttgactaaataatgcagagctgaaat--tctatatatagta------tat |
17002855 |
T |
|
| Q |
119 |
attgtcttcaaggtagaaagatacttggatat--tagtttgtccatgcataaagttaattttccatcaatgaaaaatgaacatagtcataatgtttgaca |
216 |
Q |
| |
|
||||||||||| ||| |||||||| || |||| |||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17002856 |
attgtcttcaaagtacaaagatacgtgaatatattagtgtggcaatgcataaagttaattttccatcaatgaaaaatgaacatagtcataatgtttgaca |
17002955 |
T |
|
| Q |
217 |
ataggtgatgaaatgaaaataatattcttcttgtgatgtcccataactgtaaagtgcttaaaattttcaaaatctaagaaaaggtcccaaacatatttga |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17002956 |
ataggtgatgaaatgaaaataatattcttcttgtgatgtcccataacggtaaagtgcttaaaattttcaaaatctaagaaaaggtcccaaacatatttga |
17003055 |
T |
|
| Q |
317 |
ttccatttaacacttgcgtgatatttgcatctttaaacatgtatggaagaacataatgtggctactcgatgttggaatgtctcatttccctttg |
410 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17003056 |
ttccatttgacacttgcgtgatatttgc--------------atggaagaacataatgtggctactcgatgttggaatgtctcatttccctttg |
17003135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 17036803 - 17036900
Alignment:
| Q |
18 |
aacaatcaacaaaaagcttatcagttagatctacttcactagcttgctgccttggttatattatgcataggtataatgttctatatatagtacaaatat |
116 |
Q |
| |
|
|||||||||||||||||| || || ||||||| | ||||| ||||||| |||| || || |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17036803 |
aacaatcaacaaaaagctaataagctagatctgttagactagtttgctgcgttggctaaataatgcatag-tataatgttctatatatagtacaaatat |
17036900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 17042697 - 17042826
Alignment:
| Q |
88 |
gtataatgttctatatatagtacaaatatatattgtcttcaaggtagaaagatacttggatattagtttgtccatgcataaagttaattttccatcaatg |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| ||| |||||||| || | ||| || || |||| ||||||||| | | | |||| || |
|
|
| T |
17042697 |
gtataatgttctatatatagtacaaatat----tgggttcaaagtacaaagatacgtgaaaatttgtgtggccatttataaagttagtctactatcattg |
17042792 |
T |
|
| Q |
188 |
aaaaatgaacatagtcataatgtttgacaatagg |
221 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| |
|
|
| T |
17042793 |
aaaaatgaacatagtcaggatgtttggcaatagg |
17042826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 16994743 - 16994932
Alignment:
| Q |
19 |
acaatcaacaaaaagcttatcagttagatctacttcactagcttgctgccttggttatattatgcataggtataatgttctatatatagtacaaatatat |
118 |
Q |
| |
|
|||||||||| |||||| || || ||||||| | ||||| ||||||| |||| || || |||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
16994743 |
acaatcaacataaagctaataagctagatctgttagactagtttgctgcgttggctaaataatgcatag-tataatgttctatatatattacaaatat-- |
16994839 |
T |
|
| Q |
119 |
attgtcttcaaggtagaaagatacttggatattagtttgtccatgcataaagttaattttccatcaatgaaaaatgaacatagtcataatgtttg |
213 |
Q |
| |
|
|| ||||| | | ||||||||||| | ||| || || |||| ||||||||| | | | |||| |||| |||||||||||||| ||||||| |
|
|
| T |
16994840 |
--tgggttcaaagcacaaagatacttgaaaatttgtgtggccatttataaagttagtctactatcattgaacaatgaacatagtcaggatgtttg |
16994932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 17017978 - 17018167
Alignment:
| Q |
19 |
acaatcaacaaaaagcttatcagttagatctacttcactagcttgctgccttggttatattatgcataggtataatgttctatatatagtacaaatatat |
118 |
Q |
| |
|
|||||||||| |||||| || || ||||||| | ||||| ||||||| |||| || || |||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
17017978 |
acaatcaacataaagctaataagctagatctgttagactagtttgctgcgttggctaaataatgcatag-tataatgttctatatatattacaaatat-- |
17018074 |
T |
|
| Q |
119 |
attgtcttcaaggtagaaagatacttggatattagtttgtccatgcataaagttaattttccatcaatgaaaaatgaacatagtcataatgtttg |
213 |
Q |
| |
|
|| ||||| | | ||||||||||| | ||| || || |||| ||||||||| | | | |||| |||| |||||||||||||| ||||||| |
|
|
| T |
17018075 |
--tgggttcaaagcacaaagatacttgaaaatttgtgtggccatttataaagttagtctactatcattgaacaatgaacatagtcaggatgtttg |
17018167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 221
Target Start/End: Original strand, 17048531 - 17048692
Alignment:
| Q |
55 |
actagcttgctgccttggttatattatgcataggtataatgttctatatatagtacaaatatatattgtcttcaaggtagaaagatacttggatattagt |
154 |
Q |
| |
|
||||| || |||| |||| || || |||||||| |||||||||||||||||||||||||||| || ||||| ||| |||||||| || | ||| || |
|
|
| T |
17048531 |
actagttttctgcgttggctaaatgatgcatag-tataatgttctatatatagtacaaatat----tgggttcaaagtacaaagatacgtgaaaatttgt |
17048625 |
T |
|
| Q |
155 |
ttgtccatgcataaagttaattttccatcaatgaaaaatgaacatagtcataatgtttgacaatagg |
221 |
Q |
| |
|
|| |||| ||||||||| | | | |||| |||| |||||||||||||| ||||||| ||||||| |
|
|
| T |
17048626 |
gtggccatttataaagttagtctactatcattgaacaatgaacatagtcaggatgtttggcaatagg |
17048692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 17032320 - 17032385
Alignment:
| Q |
238 |
atattcttcttgtgatgtcccataactgtaaagtgcttaaaattttcaaaatctaagaaaaggtccc |
304 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| ||||| | |||||||| | | |||||||||| |
|
|
| T |
17032320 |
atattcttcttgtgatgt-ccataacggtaaagtgattaaattcttcaaaattttacaaaaggtccc |
17032385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 16988106 - 16988138
Alignment:
| Q |
54 |
cactagcttgctgccttggttatattatgcata |
86 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
16988106 |
cactagcttgctgccttgggtatattatgcata |
16988138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University