View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_high_19 (Length: 368)
Name: NF16395_high_19
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 28381979 - 28382315
Alignment:
| Q |
13 |
agaagatcaatagctttggatcaacatctatagttaagctgaatacagaagacaatcaacaggtgaaactatcttgcttttggttaagtataattaatta |
112 |
Q |
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| T |
28381979 |
agaagatcaatagctttggatcaacatctatagttaagctgaatacagaagacaatcaacaggtgaaactatcttgcttttggttaagtataattaatta |
28382078 |
T |
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| Q |
113 |
ttcaaaattaaataaaataaattggttaattaggtttctttgtttggtgaactgaaacaagtgcttggtttttgaccttaacaaatattctttgacttac |
212 |
Q |
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| T |
28382079 |
ttcaaaattaaataaattaaattggttaattaggtttctttgtttggtgaactgaaacaagtgcttggtttttgaccttaacaaatattctttgacttac |
28382178 |
T |
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| Q |
213 |
atatttttcagttggttattgacaatggcattgtttctgtgactttgtcaagacctgaggggcacgtcattgcaatatcgtataatggaattgacaacat |
312 |
Q |
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| T |
28382179 |
atatttttcagttggttattgacaatggcattgtttctgtgactttgtcaagacccgaggggcacgtcattgcaatatcgtataatggaattgacaacat |
28382278 |
T |
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| Q |
313 |
tcttgaatctgaaaacgatgaagatgatagagggtat |
349 |
Q |
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| T |
28382279 |
tcttgaatctgaaaacgatgaagatgatagagggtat |
28382315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 173 - 349
Target Start/End: Original strand, 28390652 - 28390828
Alignment:
| Q |
173 |
gtgcttggtttttgaccttaacaaatattctttgacttacatatttttcagttggttattgacaatggcattgtttctgtgactttgtcaagacctgagg |
272 |
Q |
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| T |
28390652 |
gtgcttggtttttgaccttaacaattattcttttacttataattttttcagttggttgttgataatggcattgtttctgtgtctatggcaagaccagagg |
28390751 |
T |
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| Q |
273 |
ggcacgtcattgcaatatcgtataatggaattgacaacattcttgaatctgaaaacgatgaagatgatagagggtat |
349 |
Q |
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| T |
28390752 |
gatacatccttggaatatcgtataatggaattgacaatgttcttgattctgaaaaccaagaactagatagagggtat |
28390828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 183 - 349
Target Start/End: Complemental strand, 28413235 - 28413070
Alignment:
| Q |
183 |
tttgaccttaacaaatattctttgacttacatatttttcagttggttattgacaatggcattgtttctgtgactttgtcaagacctgaggggcacgtcat |
282 |
Q |
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|||||| ||||||| ||||||||||||| || |||||||||| ||| |||||||||||||||||||||| |||||||||| || ||||| || |||| |
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| T |
28413235 |
tttgactttaacaattattctttgactttaat-tttttcagttagttgttgacaatggcattgtttctgtcactttgtcaaagccggagggatacctcat |
28413137 |
T |
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| Q |
283 |
tgcaatatcgtataatggaattgacaacattcttgaatctgaaaacgatgaagatgatagagggtat |
349 |
Q |
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| T |
28413136 |
tgggatatcatataatggaattgacaatattcttgaatctgaatacaaagaacatgctagagggtat |
28413070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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