View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_high_20 (Length: 364)
Name: NF16395_high_20
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 7742169 - 7742495
Alignment:
| Q |
19 |
ttaggtgcatttgcatgcaagaatttcaagtgagagtgtttaaattccaactcttaacctccaatctatatctattcttcctcaatctctcgatcactct |
118 |
Q |
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| T |
7742169 |
ttaggtgcatttgcatgcaagaatttcaagtgagagtgtttaaattccaactcttaacctccaatctatatctattcttcctcaatctctcgatcactct |
7742268 |
T |
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| Q |
119 |
ccactaccattctccttcaccctcgtttcaagaacaaaattccaatcgtaaagcttccatattccaattccaatcgtaaagcttccaacaaaaacaaaat |
218 |
Q |
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| T |
7742269 |
ccactaccattctccttcaccctcgtttcaagaacaaaattccaatcgtaaagcttccatattccaattccaatcgtaaagcttccaacaaaaacaaaat |
7742368 |
T |
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| Q |
219 |
tcgttaaaattcaatctagggtttgcagcgatgagtcgtcgtcgacgaatgcatgaagatgaagatgaagaggatgaaagaggcggcggcggtggaaata |
318 |
Q |
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| T |
7742369 |
tcgttaaaattcaatctagggtttgcagcgatgagtcgtcgtcgacgaatgc------atgaagatgaagaggatgaaagaggcggcggcggtggaaata |
7742462 |
T |
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| Q |
319 |
agcggaggaggccgagttttatcgatgatgatg |
351 |
Q |
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| T |
7742463 |
agcggaggaggccgagttttatcgatggtgatg |
7742495 |
T |
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Back To:
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 40863466 - 40863517
Alignment:
| Q |
300 |
ggcggcggcggtggaaataagcggaggaggccgagttttatcgatgatgatg |
351 |
Q |
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| T |
40863466 |
ggcggtggcggtggaaagaagcggaggaggcccagttttatcgatgatgatg |
40863517 |
T |
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