View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16395_high_27 (Length: 300)
Name: NF16395_high_27
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_high_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 2435671 - 2435963
Alignment:
| Q |
1 |
gatgtcagacaccaacacaacattgtcactcgtgattgtatacaatcacttctatttttctaaattagtactcgtatgtatgtatccgtatcgtgtcagt |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2435671 |
gatgtctgacaccaacacaacattgtcactcgtgattgtatacaatcacttctatttttctaaattagtactcgtatgtatgtatccgtatcgtgtcagt |
2435770 |
T |
|
| Q |
101 |
agtcagttagaatttcttggtaatatgagacactaataactatgggatatcaatttatgtatattaggtactttccagaaggcattgacatttactttga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2435771 |
agtcagttagaatttcttggtaatatgagacactaataactatgggatatcaatttatgtatattaggtactttccagaaggcattgacatttactttga |
2435870 |
T |
|
| Q |
201 |
gaatgttggtgggaaaacacttgatgctgtacttttgaatatgagagtccatggccgcatacctgtaagtggaatgatctcacagtataatct |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2435871 |
gaatgttggtgggaaaacacttgatgctgtacttttgaatatgagagtccatggccgcatacctgtaagtggaatgatctcacagtacaatct |
2435963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 145 - 293
Target Start/End: Complemental strand, 2516540 - 2516392
Alignment:
| Q |
145 |
ggatatcaatttatgtatattaggtactttccagaaggcattgacatttactttgagaatgttggtgggaaaacacttgatgctgtacttttgaatatga |
244 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||| |
|
|
| T |
2516540 |
ggatatcaatttatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactcttgaatatga |
2516441 |
T |
|
| Q |
245 |
gagtccatggccgcatacctgtaagtggaatgatctcacagtataatct |
293 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2516440 |
aactccatggccgcatacctgtgtgtggaatgatctcacagtataatct |
2516392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 146 - 293
Target Start/End: Original strand, 2432455 - 2432602
Alignment:
| Q |
146 |
gatatcaatttatgtatattaggtactttccagaaggcattgacatttactttgagaatgttggtgggaaaacacttgatgctgtacttttgaatatgag |
245 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| |||||||| |||||||||| |
|
|
| T |
2432455 |
gatatcaatgtatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgacgctgtactcttgaatatgaa |
2432554 |
T |
|
| Q |
246 |
agtccatggccgcatacctgtaagtggaatgatctcacagtataatct |
293 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2432555 |
actccatggccgcatacctgtaagtggaatgatctcacagtataatct |
2432602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 130 - 293
Target Start/End: Original strand, 2429457 - 2429620
Alignment:
| Q |
130 |
acactaataactatgggatatcaatttatgtatattaggtactttccagaaggcattgacatttactttgagaatgttggtgggaaaacacttgatgctg |
229 |
Q |
| |
|
||||||||||||| |||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| || || || ||||||||||||| |
|
|
| T |
2429457 |
acactaataactagtagatatcaatttatgtaaactagatactttccagaaggcattgacatttactttgagaatgtggggggaaagacacttgatgctg |
2429556 |
T |
|
| Q |
230 |
tacttttgaatatgagagtccatggccgcatacctgtaagtggaatgatctcacagtataatct |
293 |
Q |
| |
|
|||| |||||||||| | ||||||| || |||||||| ||||||||||||||||||| ||||| |
|
|
| T |
2429557 |
tactcttgaatatgaaactccatgggcggatacctgtgtgtggaatgatctcacagtacaatct |
2429620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 178 - 293
Target Start/End: Complemental strand, 2496934 - 2496819
Alignment:
| Q |
178 |
gaaggcattgacatttactttgagaatgttggtgggaaaacacttgatgctgtacttttgaatatgagagtccatggccgcatacctgtaagtggaatga |
277 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || || ||||||||||||||||| ||||| ||||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
2496934 |
gaaggcattgatatttactttgagaatgttggaggcaagacacttgatgctgtactcttgaacatgagagtccacggccgcatacctgcatgtggaatga |
2496835 |
T |
|
| Q |
278 |
tctcacagtataatct |
293 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
2496834 |
tctcacagtacaatct |
2496819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 148 - 293
Target Start/End: Complemental strand, 2505645 - 2505500
Alignment:
| Q |
148 |
tatcaatttatgtatattaggtactttccagaaggcattgacatttactttgagaatgttggtgggaaaacacttgatgctgtacttttgaatatgagag |
247 |
Q |
| |
|
||||| ||||||| || ||| ||||||||||||||||||| ||||||||||||| || ||||| || ||||||||||| ||||| ||||| |||||| |
|
|
| T |
2505645 |
tatcattttatgtgaatcaggcactttccagaaggcattgatgtttactttgagaacgtcggtggcaagacacttgatgccgtactcttgaacatgagat |
2505546 |
T |
|
| Q |
248 |
tccatggccgcatacctgtaagtggaatgatctcacagtataatct |
293 |
Q |
| |
|
| || || ||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
2505545 |
tacaaggtcgcatacctgtgtgtggaatgatctcacagtacaatct |
2505500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 145 - 293
Target Start/End: Complemental strand, 2512269 - 2512121
Alignment:
| Q |
145 |
ggatatcaatttatgtatattaggtactttccagaaggcattgacatttactttgagaatgttggtgggaaaacacttgatgctgtacttttgaatatga |
244 |
Q |
| |
|
|||||||||||| | | || ||| ||||||||||||| |||||| ||||||||||||| ||||| || || ||||||||||| ||||| ||||| |||| |
|
|
| T |
2512269 |
ggatatcaatttggggaaatcaggcactttccagaaggaattgacgtttactttgagaacgttggaggcaagacacttgatgccgtactcttgaacatga |
2512170 |
T |
|
| Q |
245 |
gagtccatggccgcatacctgtaagtggaatgatctcacagtataatct |
293 |
Q |
| |
|
| | ||||| ||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
2512169 |
aactacatggtcgcatacctgtgtgtggaatgatctcacagtacaatct |
2512121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 2429325 - 2429403
Alignment:
| Q |
8 |
gacaccaacacaacattgtcactcgtgattgtatacaatcacttctatttttctaaattagtactcgtatgtatgtatc |
86 |
Q |
| |
|
|||||||||| |||| ||| || ||||||| ||||| ||||||||||||||| |||||| || |||| ||||| |||| |
|
|
| T |
2429325 |
gacaccaacataacagcgtctcttgtgattgcatacactcacttctatttttccaaattattattcgtgtgtatttatc |
2429403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 41540465 - 41540512
Alignment:
| Q |
165 |
taggtactttccagaaggcattgacatttactttgagaatgttggtgg |
212 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
41540465 |
taggtactttcccgaaggaattgacatatactttgacaatgttggtgg |
41540512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University