View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16395_high_28 (Length: 299)
Name: NF16395_high_28
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_high_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 32813621 - 32813457
Alignment:
| Q |
1 |
aaataattaaataataattatagcatgtgtacgtttttgtg-ggtgtgaccaaattaaatgtctgaattcttgtgtccaaccaaaaattattcattttcg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
32813621 |
aaataattaaataataattatagcatgtgtacttttttttttggtgtgaccaaattaaatgtttgaattcttgtgtccaactaaaaattattcgttttcg |
32813522 |
T |
|
| Q |
100 |
ggcatctatatagatcaaatcaagaacatgtaaaataggcccttaaagttttgcatttccttagg |
164 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32813521 |
ggcatctatatagatcaaatcaagaacctgtaaaataggcccttaaagttttgcatttctttagg |
32813457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 32812904 - 32812780
Alignment:
| Q |
162 |
aggaggaagagccacaataatatttaccccatcatcaccaccttcacctccgtgaaaagaagggaacaatagtataatatccttcttatgataaactact |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32812904 |
aggaggaagagccacaataatatttaccccatcatcaccaccttcaactccgtgaaaagaagggaacaatagtataatatccttcttatgataaaccact |
32812805 |
T |
|
| Q |
262 |
ggacaacaatacttaggcttccccc |
286 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
32812804 |
ggacaacaatacttaggcttccccc |
32812780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 110 - 286
Target Start/End: Complemental strand, 32830486 - 32830310
Alignment:
| Q |
110 |
tagatcaaatcaagaacatgtaaaataggcccttaaagttttgcatttccttaggaggaagagccacaataatatttaccccatcatcaccaccttcacc |
209 |
Q |
| |
|
||||| ||||||| || ||||||||| | |||||| |||| |||||| | ||||||||||||| ||||||||||| || ||| ||||||||||||| |
|
|
| T |
32830486 |
tagattaaatcaaaaaagtgtaaaataaactcttaaatttttccatttcatctcgaggaagagccactataatatttactccgtcaccaccaccttcacc |
32830387 |
T |
|
| Q |
210 |
tccgtgaaaagaagggaacaatagtataatatccttcttatgataaactactggacaacaatacttaggcttccccc |
286 |
Q |
| |
|
||| | ||||||||| || |||||||||||||||||| |||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
32830386 |
tccattaaaagaaggaaataatagtataatatccttcctatgataaaccacaggacaacaatacttaggcttccccc |
32830310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University