View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_high_29 (Length: 290)
Name: NF16395_high_29
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 32813889 - 32813651
Alignment:
| Q |
19 |
agcataatccctttagtttcccttctctccttaagactcgaagtacattcctggcagcggttgagagtgacttgcctaagcccatgaattcgcgaatcca |
118 |
Q |
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| T |
32813889 |
agcataatccctttagtttcccttctctccttaagacttgaagtacattcctggcagcggttgagagtgacttgcc-aggcctatgaattcgcgaatcca |
32813791 |
T |
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| Q |
119 |
accgcagttaagatgaccgaactaaggtgtaatgtatgctagatacaatttataaattgaattttgaagatg-ttcttttgaaaactgaatttatcaagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || | |
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| T |
32813790 |
accgcagttaagatgaccgaactaaggtgtaatgtatgctagatacgatttataaattgaattttgaagatgtttcttttgaaaactgaatttattaaat |
32813691 |
T |
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| Q |
218 |
tatttcttgaatttggaaagtaaagaagattatgatcata |
257 |
Q |
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| T |
32813690 |
tatttcttgaatttggaaagtaaagaagattatgatcata |
32813651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 32 - 257
Target Start/End: Complemental strand, 42162927 - 42162702
Alignment:
| Q |
32 |
tagtttcccttctctccttaagactcgaagtacattcctggcagcggttgagagtgacttgcctaagcccatgaattcgcgaatccaaccgcagttaaga |
131 |
Q |
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||||| |||||| || | |||||| ||| |||||||||| | | ||||||||||||| || |||||||| ||||||| ||||| |||||||||||| |
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| T |
42162927 |
tagttgcccttcactgcataagacccgatgtacattcctaacggtggttgagagtgacccgcttaagcccacaaattcgcaaatccggccgcagttaaga |
42162828 |
T |
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| Q |
132 |
tgaccgaactaaggtgtaatgtatgctagatacaatttataaattgaattttgaagatgttcttttgaaaactgaatttatcaagttatttcttgaattt |
231 |
Q |
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| T |
42162827 |
tgaccaaactaaggtgtaatttatgctagatacaatttacaaattgaattttgaacaatttcttttgaaaaatgaatttctcaagttttttcttgaattt |
42162728 |
T |
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| Q |
232 |
ggaaagtaaagaagattatgatcata |
257 |
Q |
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| T |
42162727 |
ggaaagtaaggaagattatgatcata |
42162702 |
T |
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