View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_high_32 (Length: 274)
Name: NF16395_high_32
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 39782380 - 39782118
Alignment:
| Q |
14 |
atatattcaataccagggtctaaccttgccactgcctcagggtcccatgatgatggcacagcttctttgacatgatcatagagttaaccatgatactttt |
113 |
Q |
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| T |
39782380 |
atatattcaataccagggtctaaccttgccactgcctcagggtcccatgatgatggcacagcttctttgacatgatcatagagttcaccatgatactttt |
39782281 |
T |
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| Q |
114 |
ctaattcaacggtatagcgtttgatgaaccat-catcataagccagatggacaattgaagccaaatc-ttttgt--------------acccaaatgaag |
197 |
Q |
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| T |
39782280 |
ctaattcaacggtatagcgtttgatgaaccatccatcataagccagatggacaattgaagccaaatctttttgtaccttggaaatgtaacccaaatgaag |
39782181 |
T |
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| Q |
198 |
cataaaagtgaccggatgcagttttgccgccca----ggcgcatttcatggttgaaatgttcc |
256 |
Q |
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| T |
39782180 |
cataaaagtgaccggatgcagttttgccgcccaggccggcgcatttcacggttgaaatgttcc |
39782118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 26 - 254
Target Start/End: Complemental strand, 39788825 - 39788582
Alignment:
| Q |
26 |
ccagggtctaaccttgccactgcctcagggtcccatgatgatggcacagcttctttgacatgatcatagagttaaccatgatacttttctaattcaacgg |
125 |
Q |
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| T |
39788825 |
ccagggtctaaccttgccaaagcttcagggtcccatgatgatggcacagcttctttgacatgatcgtggagttcaccatgatatctttctaattcaacgg |
39788726 |
T |
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| Q |
126 |
tatagcgtttgatgaacca-tcatcataagccagatggacaattgaagccaaatcttttgta--------------cccaaatgaagcataaaagtgacc |
210 |
Q |
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| T |
39788725 |
tatagcgtttgatgaaccagccatcataagcaagatggacgattgaatccaattcttttaaaccttgaaaacatatcccaaatgaagcacaaaagtgacc |
39788626 |
T |
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| Q |
211 |
ggatgcagttttgccgcccaggcgcatttcatggttgaaatgtt |
254 |
Q |
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| T |
39788625 |
ggatgcaattttgccagacaggcgcatttcacggttgaaatgtt |
39788582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 254
Target Start/End: Complemental strand, 39793836 - 39793600
Alignment:
| Q |
33 |
ctaaccttgccactgcctcagggtcccatgatgatggcacagcttctttgacatgatcatagagttaaccatgatacttttctaattcaacggtatagcg |
132 |
Q |
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| T |
39793836 |
ctaaccttgtcaaggccccagcgtcccataatgatggcacaacttctttgacatgatcatggagttgaccatgatacttttctaattcaacagcatagcg |
39793737 |
T |
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| Q |
133 |
tttgatgaacc-atcatcataagccagatggacaattgaagccaaatcttttgt--------------acccaaatgaagcataaaagtgaccggatgca |
217 |
Q |
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| T |
39793736 |
tttgatgaaccaaccatcataagcaagatggatgattgaatccaattcttttgtaccgtgaaaatgcaacccaaatgaagcacaaaagtgaccggatgca |
39793637 |
T |
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| Q |
218 |
gttttgccgcccaggcgcatttcatggttgaaatgtt |
254 |
Q |
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| T |
39793636 |
gtttttccatccaggcgcatttcatggttgaaatgtt |
39793600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 39776065 - 39775953
Alignment:
| Q |
32 |
tctaaccttgccactgcctcagggtcccatgatgatggcacagcttctttgacatgatcatagagttaaccatgatacttttctaattcaacggtatagc |
131 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| || | ||||| |
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| T |
39776065 |
tctaaccttgccaaggcctcagggtcccatgatgatggcacagcttctttgacatgatcatggagttcaccatgatagttttctaattctacagcatagc |
39775966 |
T |
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| Q |
132 |
gtttgatgaacca |
144 |
Q |
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| T |
39775965 |
gtttgatgaacca |
39775953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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