View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_high_40 (Length: 244)
Name: NF16395_high_40
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_high_40 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 34567534 - 34567319
Alignment:
| Q |
12 |
aagaagatgagaaatttgaggaccagaactaactgcatgcattcgcttccaatattgaacttccacctgatcaaggattatatggataatatctctatac |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34567534 |
aagaagatgagaaatttgaggaccagaactaactgcatgcattcgcttccaatattgaacttccacctgatcaagaattatatggataatatctctatac |
34567435 |
T |
|
| Q |
112 |
gaataacagagataaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttag |
211 |
Q |
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|||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34567434 |
gaataacaaaaataaggggagagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttag |
34567335 |
T |
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| Q |
212 |
gaaaagatatgcaatg |
227 |
Q |
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|||||||||||||||| |
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| T |
34567334 |
gaaaagatatgcaatg |
34567319 |
T |
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Target: scaffold0012 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 111036 - 111138
Alignment:
| Q |
124 |
taaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgc |
223 |
Q |
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||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||| || |||||||||| ||||||||| |||| ||||||||| |
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| T |
111036 |
taaggggagagagggtctccttgatgaattcctctagttggagtgaaagtgtcagttttgtctccattccacaaaattttgtaactaggcgaagatatgc |
111135 |
T |
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| Q |
224 |
aat |
226 |
Q |
| |
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||| |
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| T |
111136 |
aat |
111138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 24783257 - 24783155
Alignment:
| Q |
124 |
taaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgc |
223 |
Q |
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||||||| |||||| ||||||| | ||||||||||||| || |||| |||||||||| |||||||||||||| ||||||||| |||| ||||||||| |
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| T |
24783257 |
taaggggagagaggatctccttgacgaattcctctagttggagtgaacgtgtcagttttatccccattccacaaaattttgtaactaggcgaagatatgc |
24783158 |
T |
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| Q |
224 |
aat |
226 |
Q |
| |
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||| |
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| T |
24783157 |
aat |
24783155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 35197735 - 35197837
Alignment:
| Q |
124 |
taaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgc |
223 |
Q |
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||||||| |||||| ||||||| | ||||||||||||| || |||| |||||||||| |||||||||||||| ||||||||| |||| ||||||||| |
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| T |
35197735 |
taaggggagagaggatctccttgacgaattcctctagttggagtgaacgtgtcagttttatccccattccacaaaattttgtaactaggcgaagatatgc |
35197834 |
T |
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| Q |
224 |
aat |
226 |
Q |
| |
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||| |
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| T |
35197835 |
aat |
35197837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 46021129 - 46021231
Alignment:
| Q |
124 |
taaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgc |
223 |
Q |
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||||||| |||||| ||||||| | ||||||||||||| || |||| |||||||||| |||||||||||||| ||||||||| |||| ||||||||| |
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| T |
46021129 |
taaggggagagaggatctccttgacgaattcctctagttggagtgaacgtgtcagttttatccccattccacaaaattttgtaactaggcgaagatatgc |
46021228 |
T |
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| Q |
224 |
aat |
226 |
Q |
| |
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||| |
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| T |
46021229 |
aat |
46021231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 49574765 - 49574867
Alignment:
| Q |
124 |
taaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgc |
223 |
Q |
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||||||| |||||| ||||||| | ||||||||||||| || |||| |||||||||| |||||||||||||| ||||||||| |||| ||||||||| |
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| T |
49574765 |
taaggggagagaggatctccttgacgaattcctctagttggagtgaacgtgtcagttttatccccattccacaaaattttgtaactaggcgaagatatgc |
49574864 |
T |
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| Q |
224 |
aat |
226 |
Q |
| |
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||| |
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| T |
49574865 |
aat |
49574867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 225
Target Start/End: Original strand, 8057085 - 8057186
Alignment:
| Q |
124 |
taaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgc |
223 |
Q |
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||||||| |||||| ||||||| | ||||||||||||| || |||| |||||||||| |||||||||||||| ||||||||| |||| ||||||||| |
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| T |
8057085 |
taaggggagagaggatctccttgacgaattcctctagttggagtgaacgtgtcagttttatccccattccacaaaattttgtaactaggcgaagatatgc |
8057184 |
T |
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| Q |
224 |
aa |
225 |
Q |
| |
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|| |
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|
| T |
8057185 |
aa |
8057186 |
T |
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