View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16395_high_42 (Length: 236)

Name: NF16395_high_42
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16395_high_42
NF16395_high_42
[»] chr5 (2 HSPs)
chr5 (5-221)||(18644139-18644355)
chr5 (13-45)||(18634671-18634703)
[»] chr1 (2 HSPs)
chr1 (13-45)||(15087781-15087813)
chr1 (13-45)||(22210389-22210421)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 18644355 - 18644139
Alignment:
Q  5 gtgcacaatgctacaaattcacttcataggattgattggccaactgatggaaaactgtaccaatctgccaatatttatgacatcgtaagctcttcttgtg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18644355 gtgcacaatgctacaaattcacttcataggattgattggccaactgatggaaaactgtaccaatctgccaatatttatgacatcgtaagctcttcttgtg 18644256  T
Q  105 gccatcttaatttggatgtatttggtttgtttgcaggttgcannnnnnnnnaatttagactttagaagtctagaataaactcctaaagtagtcctctaaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18644255 gccatcttaatttggatgtatttggtttgtttgcaggttgcatttttttttaatttagactttagaagtctagaataaactcctaaagtagtcctctaaa 18644156  T
Q  205 aattatggtgtcctgac 221  Q
    |||||||||||||||||    
T  18644155 aattatggtgtcctgac 18644139  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 18634703 - 18634671
Alignment:
Q  13 tgctacaaattcacttcataggattgattggcc 45  Q
    ||||||||||||||||||||| |||||||||||    
T  18634703 tgctacaaattcacttcatagaattgattggcc 18634671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 15087781 - 15087813
Alignment:
Q  13 tgctacaaattcacttcataggattgattggcc 45  Q
    ||||||||||||||||||||| |||||||||||    
T  15087781 tgctacaaattcacttcatagaattgattggcc 15087813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 22210389 - 22210421
Alignment:
Q  13 tgctacaaattcacttcataggattgattggcc 45  Q
    ||||||||||||||||||||| |||||||||||    
T  22210389 tgctacaaattcacttcatagaattgattggcc 22210421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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