View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_high_43 (Length: 235)
Name: NF16395_high_43
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_high_43 |
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| [»] scaffold0340 (1 HSPs) |
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Alignment Details
Target: scaffold0340 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 7118 - 7352
Alignment:
| Q |
1 |
ctctaacatcaaacataacacaaattataaatgactaattataaacgccatatactcaagtataagacattttctaaattttcacatgtataaataactt |
100 |
Q |
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| T |
7118 |
ctctaacatcaaacataacacaaattataaatgactaattataaacgccatatactcaagtataagacattttctaaattttcacatgtataaataattt |
7217 |
T |
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| Q |
101 |
cttataagaataacctacaattcacttgatattaatttatcaaacaaaacactaaataaattcacnnnnnnngttaatctttttacaaggagagataatt |
200 |
Q |
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| T |
7218 |
cttacaagaataacctgcaattcacttgatattaatttattaaacaaaactctacataaattcactttttttgttaatctttttacaaggggaggtaatt |
7317 |
T |
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| Q |
201 |
tctgaaaccaatttatacaaaaagtcttcatctca |
235 |
Q |
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| T |
7318 |
tctgaaaccaatttatacaaaaagtcttcatctca |
7352 |
T |
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