View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16395_high_45 (Length: 227)
Name: NF16395_high_45
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_high_45 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39782803 - 39782577
Alignment:
| Q |
1 |
gcttaacaaaaaattggatgaaattttaggtgcgattagcgaagttgtttcattcattatatctcgtcaaaaataaaataggttcaaattgacaaaaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39782803 |
gcttaacaaaaaattggatgaaattttaggtgcgattagtgaagttgtttcattcattatatctcgtcaaaaataaaataggttcaaattgacaaaaaga |
39782704 |
T |
|
| Q |
101 |
acggatatcaacttgcatatgtataaaaacttgatttattgttagtatgacttgttacttgttattatagttacgttgatagaaagaagtgagtagacac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39782703 |
acggatatcaacttgcatatgtataaaaacttgatttattgttaggatgacttgttacttgttattatagttacgttgatagaaagaagtgagtagacac |
39782604 |
T |
|
| Q |
201 |
tattagtacctaccatgataaaggttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
39782603 |
tattagtacctaccatgataaaggttt |
39782577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 39789213 - 39789106
Alignment:
| Q |
47 |
gtttcattcattatatctcgtcaaaaataaaataggttcaaattgacaaaaagaacggatatcaacttgcatatgtataaaaacttgatttattgttagt |
146 |
Q |
| |
|
|||| ||||||||||||| ||| |||||| |||||||| |||||||||||| || |||||||||| ||||||||| || ||||||| ||||||||||| |
|
|
| T |
39789213 |
gtttaattcattatatctggtctaaaatagaataggtttaaattgacaaaa--aaaggatatcaacatgcatatgtttacaaacttggtttattgttagg |
39789116 |
T |
|
| Q |
147 |
atgacttgtt |
156 |
Q |
| |
|
|||| ||||| |
|
|
| T |
39789115 |
atgaattgtt |
39789106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 161
Target Start/End: Complemental strand, 39793976 - 39793850
Alignment:
| Q |
34 |
gattagcgaagttgttt-cattcattatatctcgtcaaaaataaaataggttcaaattgacaaaaagaacggatatcaacttgcatatgtataaaaactt |
132 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || || || |||| |||||||| ||||||||| ||| | | ||| ||||||||||||||||| |||||| |
|
|
| T |
39793976 |
gattaacgaagttgttttcattcattataactggtaaagaatataataggttgaaattgacagaaaaa--gaataacaacttgcatatgtatataaactt |
39793879 |
T |
|
| Q |
133 |
gatttattgttagtatgacttgttacttg |
161 |
Q |
| |
|
| |||| |||||| |||| |||||||||| |
|
|
| T |
39793878 |
ggtttactgttaggatgagttgttacttg |
39793850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University