View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16395_high_6 (Length: 493)
Name: NF16395_high_6
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 24949877 - 24950358
Alignment:
| Q |
1 |
aaatcaaaagagaatggtaaatgagttttaagatctcatcattgagctagaccagaatgatcaaagccgagagctaagggcgaaatagcccgagacttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
24949877 |
aaatcaaaagagaatggtaaatgagttttaagatctcatcattgagctagaccagaatgatcaaagccgagagctatgggcgaaatagccagagacttgt |
24949976 |
T |
|
| Q |
101 |
aagtgttaaagtcattgtaagttgacttgtctgttctgattcacttgattatccatttgtttctatcaccatcccaagcacactcgatgatctttcgaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24949977 |
aagtgttaaagtcattgtaagttgacttgtctgttctgattcacttgattatccatttgtttctatcaccatcccaagcacactcgatgatctttcgaga |
24950076 |
T |
|
| Q |
201 |
ataaagcatgaagtctgaaccttatgaagattttagattttcattaagcatttgaatcgaaccggatgcaaat-aagaaacaggacaaactatagtcttt |
299 |
Q |
| |
|
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
24950077 |
ataaagcacgaggtccgaaccttatgaagattttagattttcattaagcatttgaatcgaaccggatgcaactaaagaaacaggacaaactatagtcttt |
24950176 |
T |
|
| Q |
300 |
gaaacataaacatgcatgacaacatcatgtgcgcataagtggtgctgaaacatcatagcagacaaacttagatgcctattcccatacattttctggtatg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24950177 |
gaaacataaacatgcatgacaacatcatgtgcgcataagtggtgctgaaacatcatagcagacaaacttagatgcctattcccatacattttctggtatg |
24950276 |
T |
|
| Q |
400 |
tctagaa---attggttatactgctnnnnnnnntcttcatgaccttcgaatgcaacaataaacccttccatgggtttctttt |
478 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24950277 |
tctagaaattattggctatactgctaaaaaaaatcttcatgaccttcgaatgcaacaataaacccttccatgggtttctttt |
24950358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 96 - 386
Target Start/End: Original strand, 24367141 - 24367428
Alignment:
| Q |
96 |
cttgtaagtgttaaagtcattgtaagttgacttgtctgttctgattcacttgattatccatttgtttctatcaccatcccaagcacactcgatgatcttt |
195 |
Q |
| |
|
||||||||| || ||||||||| ||||||||| |||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24367141 |
cttgtaagtatttaagtcattgggagttgacttatctgttctgactcgcttgaatatccattcgtttctatcaccatcccaagcacactcgatgattttt |
24367240 |
T |
|
| Q |
196 |
cgagaataaagcatgaagtctgaaccttatgaagattttagattttcattaagcatttgaatcgaaccggatgcaaat-aagaaacaggacaaactatag |
294 |
Q |
| |
|
| ||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| |||||| |||||| | || ||||||||||| ||| || |
|
|
| T |
24367241 |
ccagaataaagcatggggtctgaaccttctgcagattttagattttcattaagcatttgaattgaaccgaatgcaactaaaaaaacaggacaagctacag |
24367340 |
T |
|
| Q |
295 |
tctttgaaacataaacatgcatgacaacatcatgtgcgcataagtggtgctgaaacatcatagcagacaaacttagatgcctattcccatac |
386 |
Q |
| |
|
||| |||| |||| ||||||||||||||| ||||| ||||| |||||||||||||| || ||||||||||| ||| |||||||||| |
|
|
| T |
24367341 |
acttcaaaacgtaaa----catgacaacatcatgcgcgcacaagtgttgctgaaacatcattacaaacaaacttagacgccaattcccatac |
24367428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 430 - 479
Target Start/End: Original strand, 24367941 - 24367990
Alignment:
| Q |
430 |
tcttcatgaccttcgaatgcaacaataaacccttccatgggtttcttttt |
479 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24367941 |
tcttcctgaccttcgaatgcaacaataaacccttccatgagtttcttttt |
24367990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 3000660 - 3000595
Alignment:
| Q |
30 |
aagatctcatcattgagctagaccagaatgatcaaagccgagagctaagggcgaaatagcccgagact |
97 |
Q |
| |
|
|||| |||||| |||||||||||| ||| ||| || ||||| |||||||||||||||||||||||| |
|
|
| T |
3000660 |
aagagctcatcgttgagctagaccggaaagatgaacaccgag--ctaagggcgaaatagcccgagact |
3000595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University