View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16395_high_7 (Length: 472)

Name: NF16395_high_7
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16395_high_7
NF16395_high_7
[»] chr5 (1 HSPs)
chr5 (10-472)||(18644368-18644830)


Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 10 - 472
Target Start/End: Complemental strand, 18644830 - 18644368
Alignment:
Q  10 aatatcttgtttttgtcgggtggtcatctgggacaagaaagcttggtatgaagtactgttctaacaggccttgtgcattgtatgcggttagagcaccgca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18644830 aatatcttgtttttgtcgggtggtcatctgggacaagaaagcttggtatgaagtactgttctaacaggccttgtgcattgtatgcggttagagcaccgca 18644731  T
Q  110 tcacgagtcacaatctgaggaaccagaacatcagtgagtcactttagtaagaaattcttaactcccaattttttcatatcttttagaaagaacaaacttg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18644730 tcacgagtcacaatctgaggaaccagaacatcagtgagtcactttagtaagaaattcttaactcccaattttttcatatcttttagaaagaacaaacttg 18644631  T
Q  210 ttgctaagtttggttaattctgaaaagaatgatgaaactaatattttacatatagctcatcaactgaagaattgcatgcactgaacctaactccaacaat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18644630 ttgctaagtttggttaattctgaaaagaatgatgaaactaatattttacatatagctcatcaactgaagaattgcatgcactgaacctaactccaacaat 18644531  T
Q  310 aagcagtgctctttttccacgattcaggtggagtcggctacttgtgtttaattttaatatctactagtatatgcgtggtgtccctaaaccgctaacaatt 409  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18644530 aagcagtgctctttttccacgattcaggtggagtcagctacttgtgtttaattttaatatctactagtatatgcgtggtgtccctaaaccgctaacaatt 18644431  T
Q  410 attcatgaattttctaccagtccaaatggaaaattccttgtatttttatctgcaaaaagtgct 472  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18644430 attcatgaattttctaccagtccaaatggaaaattccttgtatttttatctgcaaaaagtgct 18644368  T

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