View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16395_low_10 (Length: 466)
Name: NF16395_low_10
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 233 - 452
Target Start/End: Original strand, 3858826 - 3859045
Alignment:
| Q |
233 |
aaattcctatcaatcaagaaataaatttcatataaggttttatttatttcagaaaatggaagttatgttccatgttgaagcccagataataatcattatg |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3858826 |
aaattcctatcaatcaagaaataaatttcatataaggttttatttgtttcagaaaatggaagctatgttccatgttgaagcccagataataatcattatg |
3858925 |
T |
|
| Q |
333 |
atgtttatttgcattttctaccaacctctctctatgacttgttttgatatttatttttcctatatttaaggagaggtaattggttaacgttggaatgatt |
432 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3858926 |
acgtttatttgcattttctaccaacctctctctatgacttgttttgatatttatttttcctatatttaaggagaggtaattggttaacgttggaatgatt |
3859025 |
T |
|
| Q |
433 |
gtcttatctaattctagatt |
452 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3859026 |
gtcttatctaattctagatt |
3859045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 3858623 - 3858738
Alignment:
| Q |
30 |
ggtaagaggactaattcctaatgacattgaataactcattatctcagcatttcctgcatagataaattgaactcctattaaccctccaattaatgtcaca |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3858623 |
ggtaagaggactaattcctaatgacattgaataactcattatctcagcatttcctgcatagataaattgaactcctattaaccctccaattaatgtcaca |
3858722 |
T |
|
| Q |
130 |
tcttccaccaccccca |
145 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
3858723 |
tcttccaccaccccca |
3858738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University