View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16395_low_11 (Length: 442)

Name: NF16395_low_11
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16395_low_11
NF16395_low_11
[»] chr3 (9 HSPs)
chr3 (1-423)||(22749935-22750358)
chr3 (3-96)||(22740789-22740882)
chr3 (3-95)||(22726945-22727037)
chr3 (1-95)||(22739944-22740038)
chr3 (31-72)||(3010328-3010369)
chr3 (31-72)||(3035714-3035755)
chr3 (379-423)||(22726601-22726645)
chr3 (379-423)||(22740372-22740416)
chr3 (379-423)||(22741150-22741194)
[»] chr5 (4 HSPs)
chr5 (1-104)||(14372717-14372820)
chr5 (3-105)||(41438377-41438479)
chr5 (3-105)||(41451546-41451648)
chr5 (18-105)||(14240537-14240624)
[»] scaffold0196 (1 HSPs)
scaffold0196 (3-73)||(13483-13553)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-73)||(7947-8019)
[»] chr6 (4 HSPs)
chr6 (1-73)||(11672961-11673033)
chr6 (3-73)||(11663913-11663983)
chr6 (24-73)||(11709504-11709553)
chr6 (3-73)||(11631069-11631139)
[»] chr8 (3 HSPs)
chr8 (15-94)||(2301269-2301348)
chr8 (15-94)||(2325488-2325567)
chr8 (21-75)||(5282655-5282709)


Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 22750358 - 22749935
Alignment:
Q  1 ttgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggtaactca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22750358 ttgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggtaactca 22750259  T
Q  101 ttttcaattttactttttattgtttacaacatagaccatgcaaatagcctatttcttaaacacttatgaaatacgaagcaccgacacaaacaagggattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22750258 ttttcaattttactttttattgtttacaacatagaccatgcaaatagcctatttcttaaacacttatgaaatacgaagcaccgacacaaacaagggattg 22750159  T
Q  201 acactgacatgcagacactagtgataatttgaatatatgaaagttattgaacgtaaccacatatgtcagtgcctgacaccgacacacgtgggtgctacat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22750158 acactgacatgcagacactagtgataatttgaatatatgaaagttattgaacgtaaccacatatgtcagtgcctgacaccgacacacgtgggtgctacat 22750059  T
Q  301 tgcttctgaaatgtgg-nnnnnnnatagcacgatccttgtatatgacaggaatgcttgctgaaacttttaagttcgaagacagtgatctatgtcacacat 399  Q
    ||||||||||||||||        |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22750058 tgcttctgaaatgtggtttttcttatagcacgatccttgtatataacaggaatgcttgctgaaacttttaagttcaaagacagtgatctatgtcacacat 22749959  T
Q  400 caagtagagttcttacctgctgct 423  Q
    ||||||||||||||||||||||||    
T  22749958 caagtagagttcttacctgctgct 22749935  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 22740789 - 22740882
Alignment:
Q  3 gctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggtaa 96  Q
    ||||||||| | || ||||||||||||||||||||  | |||||||| ||||||||  ||||||||||||||||||| ||||| ||||||||||    
T  22740789 gctcgtgctctttaccaagatgctgatatatatctgctcgatgatccctttagtgcagttgatgctcatacaggatcccatctctttaaggtaa 22740882  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 22727037 - 22726945
Alignment:
Q  3 gctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggta 95  Q
    ||||||||| | || ||||||||||||||||||||  | || ||||| ||||||||  ||||||||||||||||||| ||||| |||||||||    
T  22727037 gctcgtgctctttaccaagatgctgatatatatctgctcgacgatccctttagtgcagttgatgctcatacaggatcccatctctttaaggta 22726945  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 22739944 - 22740038
Alignment:
Q  1 ttgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggta 95  Q
    ||||||||||| | || ||| |||||||||| |||||  | || ||||| ||||||||  ||||||||||||||||||| ||||| |||||||||    
T  22739944 ttgctcgtgctctttaccaaaatgctgatatttatctgctcgacgatccctttagtgcagttgatgctcatacaggatcccatctctttaaggta 22740038  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 3010369 - 3010328
Alignment:
Q  31 tatatctatttgatgatccgtttagtgctcttgatgctcata 72  Q
    ||||| ||||||||||||| || |||||||||||||||||||    
T  3010369 tatatatatttgatgatcctttgagtgctcttgatgctcata 3010328  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 3035755 - 3035714
Alignment:
Q  31 tatatctatttgatgatccgtttagtgctcttgatgctcata 72  Q
    ||||| ||||||||||||| || |||||||||||||||||||    
T  3035755 tatatatatttgatgatcctttgagtgctcttgatgctcata 3035714  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 423
Target Start/End: Complemental strand, 22726645 - 22726601
Alignment:
Q  379 acagtgatctatgtcacacatcaagtagagttcttacctgctgct 423  Q
    |||||||||||| | ||||||||||||||||| ||||||| ||||    
T  22726645 acagtgatctatataacacatcaagtagagtttttacctgatgct 22726601  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 22740372 - 22740416
Alignment:
Q  379 acagtgatctatgtcacacatcaagtagagttcttacctgctgct 423  Q
    |||||||| ||| | ||||||||||||||||||||||||| ||||    
T  22740372 acagtgatatatataacacatcaagtagagttcttacctgatgct 22740416  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 22741150 - 22741194
Alignment:
Q  379 acagtgatctatgtcacacatcaagtagagttcttacctgctgct 423  Q
    |||||||| ||| | ||||||||||||||||||||||||| ||||    
T  22741150 acagtgatatatataacacatcaagtagagttcttacctgatgct 22741194  T

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Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 14372717 - 14372820
Alignment:
Q  1 ttgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggtaactca 100  Q
    ||||||| ||| | || |||||||||||||||||||||||||||||||| ||||||||  | |||||||||||||||||||| || ||||||||||||||    
T  14372717 ttgctcgcgctctttaccaagatgctgatatatatctatttgatgatccttttagtgccgtggatgctcatacaggatctcacctttttaaggtaactca 14372816  T
Q  101 tttt 104  Q
    ||||    
T  14372817 tttt 14372820  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 41438479 - 41438377
Alignment:
Q  3 gctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggtaactcatt 102  Q
    ||||||||| | || |||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||| |||||||| || ||||||||||||||||    
T  41438479 gctcgtgctctttaccaagatgctgatatctatctatttgatgatccttttagtgctgtggatgctcatacgggatctcacctttttaaggtaactcatt 41438380  T
Q  103 ttc 105  Q
    |||    
T  41438379 ttc 41438377  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 41451648 - 41451546
Alignment:
Q  3 gctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggtaactcatt 102  Q
    ||||||||| | || |||||||||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||| || |||||||||| |||||    
T  41451648 gctcgtgctctttaccaagatgctgatatctatctatttgacgatccttttagtgctgttgatgctcatacaggatctcacctttttaaggtaattcatt 41451549  T
Q  103 ttc 105  Q
    |||    
T  41451548 ttc 41451546  T

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Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 14240624 - 14240537
Alignment:
Q  18 caagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggtaactcattttc 105  Q
    |||||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||||||||| || ||||||||||| |||||||    
T  14240624 caagatgctgatatctatctatttgatgatccttttagtgctgtggatgctcatacaggatctcacctttttaaggtaacccattttc 14240537  T

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Target: scaffold0196 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 13483 - 13553
Alignment:
Q  3 gctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatac 73  Q
    ||||||||||| ||| |  ||||||||||||||||||| |||||||| ||||||||| |||||||||||||    
T  13483 gctcgtgctttttatgagaatgctgatatatatctattggatgatccatttagtgctgttgatgctcatac 13553  T

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Target: scaffold0019 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 8019 - 7947
Alignment:
Q  1 ttgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatac 73  Q
    ||||||||||| | |||||  ||||||||||||||||||| |||||||| ||||||||| ||||||| |||||    
T  8019 ttgctcgtgctctttatcagaatgctgatatatatctattagatgatccatttagtgctgttgatgcgcatac 7947  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 11673033 - 11672961
Alignment:
Q  1 ttgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatac 73  Q
    ||||||||||| | |||||| |||||||| |||||||||| |||||||| ||||||||| ||||||| |||||    
T  11673033 ttgctcgtgctctctatcaaaatgctgatttatatctattggatgatccatttagtgctgttgatgcgcatac 11672961  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 11663913 - 11663983
Alignment:
Q  3 gctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatac 73  Q
    ||||||||| | |||||  |||||||||||||||| || |||||||| ||||||||| ||||||| |||||    
T  11663913 gctcgtgctctttatcagaatgctgatatatatctcttggatgatccatttagtgctgttgatgcacatac 11663983  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 11709553 - 11709504
Alignment:
Q  24 gctgatatatatctatttgatgatccgtttagtgctcttgatgctcatac 73  Q
    |||||||||||||| || |||||||||||||||||| ||||||| |||||    
T  11709553 gctgatatatatctcttggatgatccgtttagtgctgttgatgcacatac 11709504  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 11631139 - 11631069
Alignment:
Q  3 gctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatac 73  Q
    ||||||||| | |||||  ||||||| ||||||||||| |||||||| ||||| ||| ||||||| |||||    
T  11631139 gctcgtgctctttatcagaatgctgacatatatctattggatgatccatttagcgctgttgatgcacatac 11631069  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 2301269 - 2301348
Alignment:
Q  15 tatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggt 94  Q
    |||||||||||||| ||||| || ||||||||||| ||||||||| | ||||||||||| ||  |||| || ||||||||    
T  2301269 tatcaagatgctgacatatacctttttgatgatccttttagtgctgtcgatgctcatactggcactcacctctttaaggt 2301348  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 2325488 - 2325567
Alignment:
Q  15 tatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaaggt 94  Q
    |||||||||||||| ||||| || ||||||||||| ||||||||| | ||||||||||| ||  |||| || ||||||||    
T  2325488 tatcaagatgctgacatatacctttttgatgatccttttagtgctgtcgatgctcataccggcactcacctctttaaggt 2325567  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 5282709 - 5282655
Alignment:
Q  21 gatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacag 75  Q
    ||||||||||| |||||  |||||||||| ||||||||  |||||||||||||||    
T  5282709 gatgctgatatttatctccttgatgatccttttagtgcagttgatgctcatacag 5282655  T

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