View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16395_low_17 (Length: 377)

Name: NF16395_low_17
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16395_low_17
NF16395_low_17
[»] chr8 (12 HSPs)
chr8 (1-358)||(2034348-2034705)
chr8 (269-358)||(2029698-2029787)
chr8 (243-358)||(2051805-2051920)
chr8 (290-358)||(2038715-2038783)
chr8 (278-358)||(2058901-2058981)
chr8 (290-358)||(2047958-2048026)
chr8 (286-358)||(2055705-2055777)
chr8 (283-358)||(1948246-1948321)
chr8 (312-357)||(10769388-10769433)
chr8 (314-357)||(2023297-2023340)
chr8 (64-97)||(2058618-2058651)
chr8 (57-97)||(2051147-2051187)
[»] chr1 (1 HSPs)
chr1 (21-88)||(17183007-17183074)
[»] chr2 (3 HSPs)
chr2 (315-358)||(28742185-28742228)
chr2 (315-358)||(28699552-28699595)
chr2 (315-358)||(28735052-28735095)
[»] chr4 (1 HSPs)
chr4 (315-358)||(48905026-48905069)


Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 2034348 - 2034705
Alignment:
Q  1 taataaaatagaacacattaagccatttgatgtatatttagagttagactagtttatcaaatctcttgcattttcaacttggtttcaagcatatagccgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2034348 taataaaatagaacacattaagccatttgatgtatatttagagttagactagtttatcaaatctcttgcattttcaacttggtttcaagcatatagccgg 2034447  T
Q  101 cgttatattccataatccatcttatttgaggtgttatgtattgcgtgccttttattattgcttactttactatttgactagttccaagtaagctatatcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2034448 cgttatattccataatccatcttatttgaggtgttatgtattgcgtgccttttattattgcttactttactatttgactagttccaagtaagctatatcc 2034547  T
Q  201 ctcaaactgataggaattgatgtctttaatctctggtttggattttaagattttagttggaagtatcaatagatgacgtaagcatataactaattatttg 300  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  2034548 ctcaaactgataggaattggtgtctttaatctctggtttggattttaagattttagttagaagtatcaatagataacgtaagcatataactaattatttg 2034647  T
Q  301 tttgcttcaattgtagcttataacaaatgacagattcaagagtgttgaacacagagta 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2034648 tttgcttcaattgtagcttataacaaatgacagattcaagagtgttgaacacagagta 2034705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 2029698 - 2029787
Alignment:
Q  269 atagatgacgtaagcatataactaattatttgtttgcttcaattgtagcttataacaaatgacagattcaagagtgttgaacacagagta 358  Q
    ||||| || ||||||||||||||||||||||||||| ||   |||||||||||||||||||| |||||||||||||||||||| ||||||    
T  2029698 atagaagatgtaagcatataactaattatttgtttgtttaccttgtagcttataacaaatgatagattcaagagtgttgaacatagagta 2029787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 358
Target Start/End: Original strand, 2051805 - 2051920
Alignment:
Q  243 ttttaagattttagttggaagtatcaatagatgacgtaagcatataactaattatttgtttgcttcaattgtagcttataacaaatgacagattcaagag 342  Q
    ||||||||| ||| ||||||| ||| |||   || |||| |||| ||||||||||||||||| || ||||||||||||| |||||||||| |||||||||    
T  2051805 ttttaagatattaattggaaggatcgataatagatgtaaacatacaactaattatttgtttgtttgaattgtagcttattacaaatgacaaattcaagag 2051904  T
Q  343 tgttgaacacagagta 358  Q
    ||||| ||| ||||||    
T  2051905 tgttgtacatagagta 2051920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 2038715 - 2038783
Alignment:
Q  290 ctaattatttgtttgcttcaattgtagcttataacaaatgacagattcaagagtgttgaacacagagta 358  Q
    ||||||||| ||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2038715 ctaattattagtttgtttaccttgtagcttataacaaatgacagattcaagagtgttgaacacagagta 2038783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 278 - 358
Target Start/End: Original strand, 2058901 - 2058981
Alignment:
Q  278 gtaagcatataactaattatttgtttgcttcaattgtagcttataacaaatgacagattcaagagtgttgaacacagagta 358  Q
    |||| |||||| ||||||||||| ||| || |||||||||||||||||||||||| |||||||||||||| ||| ||||||    
T  2058901 gtaaacatatatctaattatttgattgtttgaattgtagcttataacaaatgacaaattcaagagtgttgtacatagagta 2058981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 2047958 - 2048026
Alignment:
Q  290 ctaattatttgtttgcttcaattgtagcttataacaaatgacagattcaagagtgttgaacacagagta 358  Q
    ||||||||||||||| ||   ||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  2047958 ctaattatttgtttgtttatcttgtagcttataacaaatgacagattcaagagttttgaacacaaagta 2048026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 2055705 - 2055777
Alignment:
Q  286 ataactaattatttgtttgcttcaattgtagcttataacaaatgacagattcaagagtgttgaacacagagta 358  Q
    |||||||||| |||||||| || || ||||||||||||||||||||| |||||||||||||| ||| ||||||    
T  2055705 ataactaattctttgtttgtttgaactgtagcttataacaaatgacaaattcaagagtgttgtacatagagta 2055777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 1948321 - 1948246
Alignment:
Q  283 catataactaattatttgtttgcttcaattgtagcttataacaaatgacagattcaagagtgttgaacacagagta 358  Q
    |||||| ||||||||||  ||| || | |||||||||||||||||||||| |||||||||||||||||| ||||||    
T  1948321 catatagctaattattttcttgtttgatttgtagcttataacaaatgacaaattcaagagtgttgaacatagagta 1948246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 10769388 - 10769433
Alignment:
Q  312 tgtagcttataacaaatgacagattcaagagtgttgaacacagagt 357  Q
    ||||||||||||||||||||| |||||||||||| || ||||||||    
T  10769388 tgtagcttataacaaatgacaaattcaagagtgtggagcacagagt 10769433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 2023297 - 2023340
Alignment:
Q  314 tagcttataacaaatgacagattcaagagtgttgaacacagagt 357  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||    
T  2023297 tagcttattacaaatgacaaattcaagagtgttgagcacagagt 2023340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 2058618 - 2058651
Alignment:
Q  64 tcttgcattttcaacttggtttcaagcatatagc 97  Q
    ||||||||||| ||||||||||||||||||||||    
T  2058618 tcttgcatttttaacttggtttcaagcatatagc 2058651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 2051147 - 2051187
Alignment:
Q  57 tcaaatctcttgcattttcaacttggtttcaagcatatagc 97  Q
    |||| |||| |||||||||||||||| ||||||||||||||    
T  2051147 tcaagtctcctgcattttcaacttggcttcaagcatatagc 2051187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 17183074 - 17183007
Alignment:
Q  21 agccatttgatgtatatttagagttagactagtttatcaaatctcttgcattttcaacttggtttcaa 88  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17183074 agccatttgatgtatatttagagttagactagttaatcaaatctcttgcattttcaacttggtttcaa 17183007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 28742228 - 28742185
Alignment:
Q  315 agcttataacaaatgacagattcaagagtgttgaacacagagta 358  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  28742228 agcttataacaaatgacagattcaagagtgttgagcacagagta 28742185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 28699595 - 28699552
Alignment:
Q  315 agcttataacaaatgacagattcaagagtgttgaacacagagta 358  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||    
T  28699595 agctgataacaaatgacaaattcaagagtgttgaacatagagta 28699552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 28735095 - 28735052
Alignment:
Q  315 agcttataacaaatgacagattcaagagtgttgaacacagagta 358  Q
    |||||||||||||||| | |||||||||||||||||| ||||||    
T  28735095 agcttataacaaatgataaattcaagagtgttgaacatagagta 28735052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 48905069 - 48905026
Alignment:
Q  315 agcttataacaaatgacagattcaagagtgttgaacacagagta 358  Q
    ||||||||||||||||||  || |||||||||||||||||||||    
T  48905069 agcttataacaaatgacaagtttaagagtgttgaacacagagta 48905026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University