View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_low_18 (Length: 371)
Name: NF16395_low_18
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 164 - 368
Target Start/End: Complemental strand, 33550454 - 33550250
Alignment:
| Q |
164 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33550454 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
33550355 |
T |
|
| Q |
264 |
gtaatttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgatg |
363 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33550354 |
gtattttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtttggaaaatgatg |
33550255 |
T |
|
| Q |
364 |
atatt |
368 |
Q |
| |
|
||||| |
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|
| T |
33550254 |
atatt |
33550250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 164 - 368
Target Start/End: Complemental strand, 26230829 - 26230624
Alignment:
| Q |
164 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230829 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
26230730 |
T |
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| Q |
264 |
gtaatttagtagcgcaaaatacttccctgaacattataactttaaaaag-attatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgat |
362 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230729 |
gtattttagtagcgcaaaatacttccctgaacattataactttaaaaagaattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgat |
26230630 |
T |
|
| Q |
363 |
gatatt |
368 |
Q |
| |
|
|||||| |
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|
| T |
26230629 |
gatatt |
26230624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 26230983 - 26230909
Alignment:
| Q |
10 |
catcatcacaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230983 |
catcatcacaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
26230909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 33550607 - 33550533
Alignment:
| Q |
10 |
catcatcacaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33550607 |
catcatcacaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
33550533 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 164 - 368
Target Start/End: Original strand, 8335378 - 8335582
Alignment:
| Q |
164 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
263 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8335378 |
tgataatgtaccttgattggagtgttgaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
8335477 |
T |
|
| Q |
264 |
gtaatttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgatg |
363 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8335478 |
gtattttagtagcgcaaaaaacttccctgaacattataactttaaaaagattatttccatagtatccaaaaataatgtcaacattgtctggaaaatgatg |
8335577 |
T |
|
| Q |
364 |
atatt |
368 |
Q |
| |
|
||||| |
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|
| T |
8335578 |
atatt |
8335582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 8335224 - 8335298
Alignment:
| Q |
10 |
catcatcacaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
84 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
8335224 |
catcatcacagcacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgatcgggcaacatct |
8335298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 164 - 303
Target Start/End: Original strand, 4684810 - 4684949
Alignment:
| Q |
164 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4684810 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
4684909 |
T |
|
| Q |
264 |
gtaatttagtagcgcaaaatacttccctgaacattataac |
303 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||| |
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| T |
4684910 |
gtattttagtagcgcaaaatacttccctgaacattataac |
4684949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 4684656 - 4684730
Alignment:
| Q |
10 |
catcatcacaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4684656 |
catcatcacaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
4684730 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 290 - 368
Target Start/End: Complemental strand, 26632645 - 26632567
Alignment:
| Q |
290 |
ctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgatgatatt |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||| |||||||||||| || | |||||||||||||| |
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|
| T |
26632645 |
ctgaacattataactttaaaaagattatttttatattatccaaaaagaatgtcaacattatcggaaaaatgatgatatt |
26632567 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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