View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_low_19 (Length: 368)
Name: NF16395_low_19
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 23 - 349
Target Start/End: Complemental strand, 520072 - 519767
Alignment:
| Q |
23 |
tattaattaatgaaactcttttgtttatagttattgtcaaagttacgtgcaatgcattggtgctgtctgtgacacacacatggtaccatccatgcacatg |
122 |
Q |
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| T |
520072 |
tattaattaatgaaactcttttgtttatagttattgtcaaagttacgtgcaatgcattggtgctgtctgtgacacacacatggtaccat----gcacatg |
519977 |
T |
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| Q |
123 |
gagagtttttcattctccaaggttcttgttacaaacaactttttgatggtaagttgcaagggaccaaggggtcccggtccctctaagaaaaaccggtatg |
222 |
Q |
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| T |
519976 |
gagagtttttcattctccaaggttgttgttacaaacaacttttagatggtaagttgcaagggaccaaggggtcccggtccctctaagaaaaaccggtatg |
519877 |
T |
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| Q |
223 |
gcattaattataattaatttttataaatatagcaaactgctaaaaagacaacagaaggaaagggaaaaggaagttcaataataatttaatgatggaaatg |
322 |
Q |
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| T |
519876 |
gcatta------attaatttatataaatatagcaaactgctaaaaagac-----------agggaaaaggaagttcaataataatttaacgatggaaata |
519794 |
T |
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| Q |
323 |
ttaattcctgctcaccaataaaggaca |
349 |
Q |
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| T |
519793 |
ttaattcctgctcaccaataaaggaca |
519767 |
T |
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