View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_low_2 (Length: 638)
Name: NF16395_low_2
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 21 - 526
Target Start/End: Complemental strand, 41414424 - 41413923
Alignment:
| Q |
21 |
cctgcaaccactatgaattgggcatgacaatgataatatatttatttatttttgggaaatattcaagttagcagtactatcaaacaagaccgacatcaaa |
120 |
Q |
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| T |
41414424 |
cctgcaaccactatgaattgggcatgaaaatgataatatatatatta----ttgggaaatattcaagttagcagtactatcaaacaagaccgacatcaaa |
41414329 |
T |
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| Q |
121 |
gcaacatatagtgagagatcaattcagaatgggccctctccctaacaggtggagtgcacaaaagccatcctcgtttattaaccgtgaacttttaattatt |
220 |
Q |
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| T |
41414328 |
gcaacatatagtgagagatcaattcagaatgggccctctccctaacaggtggagtgcacaaaagccatcctcgtttattaaccgtgaacttttaattatt |
41414229 |
T |
|
| Q |
221 |
taaaaatgtactatgcatgtagtatgatagattgcttttctcaactttcaatcacaaccataagtggtcacacttttgtgtgagaaccccttgctatata |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41414228 |
taaaaatgtactatgcatgtagtatgatagattgcttttctcaactttcaatcacaaccataagtggtcacacttttgtgtgagaaccccttgctatata |
41414129 |
T |
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| Q |
321 |
gtagtatatagtatacaccaccttccttaacattcaagctggtagctaaacaaagcaaagaagtaagaaagaagtgtgagtgtgaaaaatgcctcatagc |
420 |
Q |
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| T |
41414128 |
gtagtatatggtatacaccaccttccttaacattcaagctggtagctaaacaaagcaaagaagtaagaaagaagtgtgagtgtgaaaaatgcctcatagc |
41414029 |
T |
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| Q |
421 |
agcatttcaggatcagtgtcttctcccaaggtcgatgtggtcattgacatgggcaatccacttcttaacctcactgttgatggttttttgaagattggag |
520 |
Q |
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| T |
41414028 |
agcatttcaggatcagtgtcttctcccaaggtcgatgtggtcattgacatgggcaatccacttcttaacctcactgttgatggttttttgaagattggag |
41413929 |
T |
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| Q |
521 |
ctgtaa |
526 |
Q |
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| T |
41413928 |
ctgtaa |
41413923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 366 - 526
Target Start/End: Complemental strand, 41421332 - 41421174
Alignment:
| Q |
366 |
ctaaacaaagcaaagaagtaagaaagaagtgtgagtgtgaaaaatgcctcatagcagcatttcaggatcagtgtcttctcccaaggtcgatgtggtcatt |
465 |
Q |
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||||||||| ||| |||||| ||||||||| ||| ||||| |||||| ||||| ||||| || |||||||||||||| |||| ||||| ||||| |
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| T |
41421332 |
ctaaacaaaacaagaaagtaacaaagaagtg--agtttgaaagatgccttggagcagaatttccggttcagtgtcttctccacaggtggatgttgtcata |
41421235 |
T |
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| Q |
466 |
gacatgggcaatccacttcttaacctcactgttgatggttttttgaagattggagctgtaa |
526 |
Q |
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| T |
41421234 |
gacatgggaaatcctttccttaatctagctgttgatggtttcttgaagattggaactgtaa |
41421174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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