View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16395_low_24 (Length: 344)
Name: NF16395_low_24
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 41257510 - 41257815
Alignment:
| Q |
19 |
acgcaaccaccaagacgaagaagggagctggtggaaggaaaggtggtccaaggaagaagtcagtgacaagatccaccagagctggtcttcaatttccagt |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41257510 |
acgcaagcaccaagacgaagaagggagctggtggaaggaaaggtggtccaaggaagaagtcagtgacaagatccaccagagctggtcttcaatttccagt |
41257609 |
T |
|
| Q |
119 |
cggaagaatcggtcggtacttgaagaaaggaagatacgctcagcgtgttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgct |
218 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41257610 |
cggaagaatcggtcgttacttgaagaaaggaagatacgctcagcgtgttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgct |
41257709 |
T |
|
| Q |
219 |
gaggtgaatttcaatttacattttccctttttcttaatttcaattttgaatctgaaagcataatttgtgttttgtgttcaggttcttgagttggctggaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41257710 |
gaggtgaatttcaatttacattttccctttttctcaatttcaattttgaatctgaaagcataatttgtgttttgtgttcaggttcttgagttggctggaa |
41257809 |
T |
|
| Q |
319 |
atgcag |
324 |
Q |
| |
|
|||||| |
|
|
| T |
41257810 |
atgcag |
41257815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 41244798 - 41244583
Alignment:
| Q |
19 |
acgcaaccaccaagacgaagaagggagctggtggaaggaaaggtggt---ccaaggaagaagtcagtgacaagatccaccagagctggtcttcaatttcc |
115 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
41244798 |
acgcaagcaccaagacgaagaaaggagctggtggaaggaaaggtggaggaccaaggaagaagtctgtgaccagatccatcagagctggtcttcaatttcc |
41244699 |
T |
|
| Q |
116 |
agtcggaagaatcggtcggtacttgaagaaaggaagatacgctcagcgtgttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgct |
215 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
41244698 |
agttggaagaatcggtcggtacttgaagaaaggaagatacgctcagcgtgttggtactggtgctcctgtttacctcgccgctgttcttgaatatcttgct |
41244599 |
T |
|
| Q |
216 |
gctgaggtgaatttca |
231 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
41244598 |
gctgaggtgaatttca |
41244583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 34614943 - 34615019
Alignment:
| Q |
147 |
ggaagatacgctcagcgtgttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctgaggt |
223 |
Q |
| |
|
|||| ||||||| | ||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
34614943 |
ggaaaatacgctgaacgtgttggtgctggtgctcctgtttacctagctgctgttcttgaatatctcgctgctgaggt |
34615019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 34622430 - 34622506
Alignment:
| Q |
147 |
ggaagatacgctcagcgtgttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctgaggt |
223 |
Q |
| |
|
|||| ||||||| | ||||||||| ||||||||||||||||| | || ||||||||||||||||| || |||||||| |
|
|
| T |
34622430 |
ggaaaatacgctgaacgtgttggtgctggtgctcctgtttacctcgccgctgttcttgaatatctcgccgctgaggt |
34622506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 23875167 - 23875357
Alignment:
| Q |
36 |
aagaagggagctggtggaaggaaaggtgg---tccaaggaagaagtcagtgacaagatccaccagagctggtcttcaatttccagtcggaagaatcggtc |
132 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||||||||||||| ||||||||||| | |||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
23875167 |
aagaagggagccggtggaaggaaaggaggaggtccaaggaagaagtcggtgacaagatcaatcagagccggtcttcaatttccagtgggaagaatcggta |
23875266 |
T |
|
| Q |
133 |
ggtacttgaagaaaggaagatacgctcagcgtgttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctgaggt |
223 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| || || |||||||| || ||| |||| || |||||||||||||| ||||||||||| |
|
|
| T |
23875267 |
gatacttgaagaaaggaagatacgctcagcgtgtaggcacaggtgctccagtatacctagcagcagttcttgaatatctcgctgctgaggt |
23875357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 33 - 220
Target Start/End: Original strand, 24297955 - 24298145
Alignment:
| Q |
33 |
acgaagaagggagctggtggaaggaaaggtggt---ccaaggaagaagtcagtgacaagatccaccagagctggtcttcaatttccagtcggaagaatcg |
129 |
Q |
| |
|
|||||||||||||| |||||||||||||| || |||||||||||||| ||||||||||| | |||||| ||||||||||||||||| |||||||||| |
|
|
| T |
24297955 |
acgaagaagggagccggtggaaggaaaggaggaggaccaaggaagaagtcggtgacaagatcaatcagagccggtcttcaatttccagtgggaagaatcg |
24298054 |
T |
|
| Q |
130 |
gtcggtacttgaagaaaggaagatacgctcagcgtgttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctga |
220 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||| || || |||||||| || ||| |||| || ||||||||||||||||||||||| |
|
|
| T |
24298055 |
gtagatacttgaagaaaggaagatacgctcagcgtgtcggaacaggtgctccggtatacctagcagcagttcttgaatatcttgctgctga |
24298145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 23423786 - 23423596
Alignment:
| Q |
36 |
aagaagggagctggtggaaggaa---aggtggtccaaggaagaagtcagtgacaagatccaccagagctggtcttcaatttccagtcggaagaatcggtc |
132 |
Q |
| |
|
||||||||||| || |||||||| ||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||| || |||||||||||| |
|
|
| T |
23423786 |
aagaagggagcaggaggaaggaagggaggaggaccaaggaagaagtcggtgacaagatccatcagagctggtcttcaatttccggttggaagaatcggta |
23423687 |
T |
|
| Q |
133 |
ggtacttgaagaaaggaagatacgctcagcgtgttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctgaggt |
223 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| || || |||||||| || ||| |||| || |||||||||||||| ||||||||||| |
|
|
| T |
23423686 |
gatacttgaagaaaggaagatacgctcagcgtgtaggcacaggtgctccagtatacctagcagcagttcttgaatatctcgctgctgaggt |
23423596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 23448253 - 23448096
Alignment:
| Q |
66 |
ccaaggaagaagtcagtgacaagatccaccagagctggtcttcaatttccagtcggaagaatcggtcggtacttgaagaaaggaagatacgctcagcgtg |
165 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||||| ||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
23448253 |
ccaaggaagaagtcggtgacaagatcaatcagagccggtcttcaatttccagtgggaagaatcggtagatacttgaagaaaggaagatacgctcagcgtg |
23448154 |
T |
|
| Q |
166 |
ttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctgaggt |
223 |
Q |
| |
|
| || || |||||||| || ||| |||| || |||||||||||||| ||||||||||| |
|
|
| T |
23448153 |
taggcacaggtgctccagtatacctagcagcagttcttgaatatctcgctgctgaggt |
23448096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 26827719 - 26827909
Alignment:
| Q |
36 |
aagaagggagctggtggaaggaa---aggtggtccaaggaagaagtcagtgacaagatccaccagagctggtcttcaatttccagtcggaagaatcggtc |
132 |
Q |
| |
|
||||| ||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||| |||||| || || ||||| ||||||||||||||||| | |
|
|
| T |
26827719 |
aagaaaggagccggtggaaggaagggaggaggtccaaggaagaagtcggtgacaagatccatcagagccggactccaattcccagtcggaagaatcggcc |
26827818 |
T |
|
| Q |
133 |
ggtacttgaagaaaggaagatacgctcagcgtgttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctgaggt |
223 |
Q |
| |
|
| ||| |||||||||| |||| ||||||||||| || || |||||||| |||||| ||||||| ||||||||||| || ||||||||||| |
|
|
| T |
26827819 |
gttacctgaagaaaggtcgatatgctcagcgtgtcggcaccggtgctccggtttacctagctgcagttcttgaatacctcgctgctgaggt |
26827909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 23446809 - 23446745
Alignment:
| Q |
156 |
gctcagcgtgttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctga |
220 |
Q |
| |
|
||||||||||| || || |||||||| || ||| | || || ||||||||||||||||||||||| |
|
|
| T |
23446809 |
gctcagcgtgtcggaaccggtgctccagtatacctggcagcagttcttgaatatcttgctgctga |
23446745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 35961534 - 35961688
Alignment:
| Q |
66 |
ccaaggaagaagtcagtgacaagatccaccagagctggtcttcaatttccagtcggaagaatcggtcggtacttgaagaaaggaagatacgctcagcgtg |
165 |
Q |
| |
|
|||||||||||||| || |||||||| | |||||| || |||||||| ||||| ||||||||||| || |||||||||||||| |||| ||||| |||| |
|
|
| T |
35961534 |
ccaaggaagaagtcggtaacaagatcaatcagagccggacttcaattcccagtgggaagaatcggccgttacttgaagaaaggtcgatatgctcaacgtg |
35961633 |
T |
|
| Q |
166 |
ttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctga |
220 |
Q |
| |
|
| || || |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35961634 |
tcggcaccggtgctcctgtttacttagccgctgttcttgaatatcttgctgctga |
35961688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University