View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16395_low_28 (Length: 321)
Name: NF16395_low_28
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_low_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 38079705 - 38080017
Alignment:
| Q |
1 |
ttcaccttcaaccctttatgccttggcttgtgttcttgaaaatgttccttttatcaatggaagccctcaaaacacctttgtcccaggttattttccaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38079705 |
ttcaccttcaaccctttatgccttggcttgtgttcttgaaaatgttccttttatcaatggaagccctcaaaacacctttgtcccaggttattttccaaat |
38079804 |
T |
|
| Q |
101 |
tgccctttaattaattttaattttatgtatgcaaattaaatttcttgtaaccattatattatgaacgtaaccaatgagtgttgcaaatttttaaaaaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38079805 |
tgccctttaattaattttaattttatgtatgcaaattaaatttcttgtgaccattatattatgaacgtaaccaatgagtgttgcaaattttaaaaaaatt |
38079904 |
T |
|
| Q |
201 |
gaattttgcttgtatgatggttcattagggttgattgatctggccatcaaaaggaacagtttgattggtggagatgacttcaagagtggtcagacaaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38079905 |
gaattttgcttgtatgatggttcattagggttgattgatctggccatcaaaaggaacagtttgattggtggagatgacttcaagagtggtcagacaaaaa |
38080004 |
T |
|
| Q |
301 |
tcaagtctgtgtt |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38080005 |
tcaagtctgtgtt |
38080017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 39699267 - 39699355
Alignment:
| Q |
1 |
ttcaccttcaaccctttatgccttggcttgtgttcttgaaaatgttccttttatcaatggaagccctcaaaacacctttgtcccaggtt |
89 |
Q |
| |
|
||||||||| ||||| | |||| | ||||||||| | || ||||||||||| ||||||||||| ||||| ||||| ||||| ||||||| |
|
|
| T |
39699267 |
ttcaccttccaccctgtttgccattgcttgtgttatggagaatgttcctttcatcaatggaagtcctcagaacacttttgttccaggtt |
39699355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 39699445 - 39699521
Alignment:
| Q |
234 |
attgatctggccatcaaaaggaacagtttgattggtggagatgacttcaagagtggtcagacaaaaatcaagtctgt |
310 |
Q |
| |
|
|||||||| |||||||| | ||| ||||||||||||| ||||| ||||| ||||||||||| ||||| || ||||| |
|
|
| T |
39699445 |
attgatcttgccatcaagaacaactgtttgattggtggtgatgatttcaaaagtggtcagaccaaaatgaaatctgt |
39699521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University