View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_low_3 (Length: 593)
Name: NF16395_low_3
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 276 - 590
Target Start/End: Original strand, 43021927 - 43022242
Alignment:
| Q |
276 |
gcaaagttaataaataaaatgacaatgccctctacagaaaatccacaaagagcgcatagttatatacacattctacattaccttcgtcggtggggaccaa |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021927 |
gcaaagttaataaataaaatgacaatgccctctacagaaaatccacaaagagcgcatagttatatacacattctacattaccttcgtcggtggggaccaa |
43022026 |
T |
|
| Q |
376 |
cttttgctgcacttcttcctcaaccagtttagcactcccttgggaggctggttccttcacactcatagactcatgagtagcttcagatacaactgcagct |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43022027 |
cttttgctgcacttcttcctcaaccagtttagcactcccttgggaggctggttccttcacactcatagactcatgagtagcttcagatacaactgcagct |
43022126 |
T |
|
| Q |
476 |
ctaggcatctttacttgctctgatacctg-tgtgtagcagagacatcctttatctccgcagctatttcctgtatatttgtcattccttcattaacttgtg |
574 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43022127 |
ctaggcatctttacttgctctgatacctgctgtgtagcagagacatcctttatctcagcagctatttcctgtatatttgtcattccttcattaacttgtg |
43022226 |
T |
|
| Q |
575 |
aaacctttgcttctcc |
590 |
Q |
| |
|
||||||||| |||||| |
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|
| T |
43022227 |
aaacctttggttctcc |
43022242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 276 - 590
Target Start/End: Original strand, 42811541 - 42811862
Alignment:
| Q |
276 |
gcaaagttaataaataaaatgacaatgccctctacagaaaatccacaaagagcgcatagttatatacacattctacattaccttcgtcggtggggaccaa |
375 |
Q |
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|
|||||||||||||||||||||||||||||||| |||||| ||| ||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42811541 |
gcaaagttaataaataaaatgacaatgccctcaacagaagatcaacaaagaacgcatggttatatacacattctacattacctccgtcggtggggaccaa |
42811640 |
T |
|
| Q |
376 |
cttttgctgcacttcttcctcaaccagtttagcactcccttgggaggct------ggttccttcacactcatagactcatgagtagcttcagatacaact |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
42811641 |
cttttgctgcacttcttcctcaaccagtttagcactcccttgggaggctggttccggttcctttacactcatagactcatgagtaacttcagatacaact |
42811740 |
T |
|
| Q |
470 |
gcagctctaggcatctttacttgctctgatacctg-tgtgtagcagagacatcctttatctccgcagctatttcctgtatatttgtcattccttcattaa |
568 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| |||| ||| |||||||||||||||||| |||||||||||||| |
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| T |
42811741 |
gcagctctagggatctttacttgctctgatacctgctgtgtagcagagacctcctttctctcggcaactatttcctgtatatttgccattccttcattaa |
42811840 |
T |
|
| Q |
569 |
cttgtgaaacctttgcttctcc |
590 |
Q |
| |
|
||||||||||||||| |||||| |
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|
| T |
42811841 |
cttgtgaaacctttggttctcc |
42811862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 43021670 - 43021900
Alignment:
| Q |
19 |
attccagtatgaattgtagctaaaaggcggtaggcctgtcggtgtcatcatatagttctcacccccaaggtcaagtggggttttccattgtaaatctaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43021670 |
attccagtatgaattgtagctaaaaggcggtaggcctgtcggtgtcatcatatagttctcacccccaaggtcaagtggggttttccattgtaaatctaca |
43021769 |
T |
|
| Q |
119 |
tgataaataaagatcgttcaatgttattactcgactaaaaaccaatgtattgcgtggttcactaaatgttccagcactatgtaaggcagaactagaaaaa |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021770 |
tgataaataaagatcgttcaatgttattactcgactaaaaaccaatgtattgcgtggttcactaaatgttccagcactatgtaaggcagaactagaaaaa |
43021869 |
T |
|
| Q |
219 |
acagcagatttaccatttgcaggcatatgga |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
43021870 |
acagcagatttaccatttgcaggcatatgga |
43021900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 276 - 553
Target Start/End: Original strand, 35060623 - 35060901
Alignment:
| Q |
276 |
gcaaagttaataaataaaatgacaatgccctctacagaaaatccacaaagagcgcatagttatatacacattctacattaccttcgtcggtggggaccaa |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
35060623 |
gcaaagttaataaataaaatgacaatgccctcaacagaaaatgcacaaagaacgcatagttatatacacattctacattacctccgtcggtggggaccaa |
35060722 |
T |
|
| Q |
376 |
cttttgctgcacttcttcctcaaccagtttagcactcccttgggaggctggttccttcacactcatagactcatgagtagcttcagatacaactgcagct |
475 |
Q |
| |
|
||||| |||||||||||||||||||| | |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
35060723 |
cttttcttgcacttcttcctcaaccagctcagcactcccttgggagactggttccttcacattcatagactcatgagtagcttcagatacaactgcagct |
35060822 |
T |
|
| Q |
476 |
ctaggcatctttacttgctctgatacctg-tgtgtagcagagacatcctttatctccgcagctatttcctgtatatttg |
553 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||| |||||| |||| |||||||||||||||||||||| |
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| T |
35060823 |
ctagggatctttacttgctctgatacctgctgtgtagcagagacctcctttttctcagcagctatttcctgtatatttg |
35060901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 35060366 - 35060592
Alignment:
| Q |
19 |
attccagtatgaattgtagctaaaaggcggtaggcctgtcggtgtcatcatatagttctcacccccaaggtcaagtggggttttccattgtaaatctaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35060366 |
attccagtatgaattgtagctaaaaggcagtaggcctatcggtgtcatcatatagttctcacccccaaggtcaagtggggcattccattgtaaatctaca |
35060465 |
T |
|
| Q |
119 |
tgataaataaagatcgttcaatgttattactcgactaaaaaccaatgtattgcgtggttcactaaatgttccagcactatgtaaggcagaactagaaaaa |
218 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35060466 |
tgataaataaagattgttcaatgttattactcgactaaaaaccaatgtattacgtggttcactaaatgttccagcactatgtaaggcagaactagaaaaa |
35060565 |
T |
|
| Q |
219 |
acagcagatttaccatttgcaggcata |
245 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
35060566 |
acagcagatttaccatttgcaggcata |
35060592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 101 - 245
Target Start/End: Original strand, 42811367 - 42811510
Alignment:
| Q |
101 |
ttccattgtaaatctacatgataaataaagatcgttcaatgttattactcgactaaaaaccaatgtattgcgtggttcactaaatgttccagcactatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| |||| |||||||||||||||||||| || |
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|
| T |
42811367 |
ttccattgtaaatctacatgataaataaagattgttcaatgttattacttgactaaaagccaatgtattgcctggt-cactaaatgttccagcactacgt |
42811465 |
T |
|
| Q |
201 |
aaggcagaactagaaaaaacagcagatttaccatttgcaggcata |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42811466 |
aaggcagaactagaaaaaacagcagatttaccatttgcaggcata |
42811510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 347 - 466
Target Start/End: Complemental strand, 41565839 - 41565720
Alignment:
| Q |
347 |
tctacattaccttcgtcggtggggaccaacttttgctgcacttcttcctcaaccagtttagcactcccttgggaggctggttccttcacactcatagact |
446 |
Q |
| |
|
|||||||||||| | || || || ||||||||||||||||||||||||||||| | | ||||||||||| || ||||||||||||||||| |||| | |
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|
| T |
41565839 |
tctacattacctgcttcagtaggaaccaacttttgctgcacttcttcctcaacaacctgggcactcccttgagacactggttccttcacactcttagatt |
41565740 |
T |
|
| Q |
447 |
catgagtagcttcagataca |
466 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
41565739 |
catgagtagcttcagataca |
41565720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 41566297 - 41566237
Alignment:
| Q |
64 |
catcatatagttctcacccccaaggtcaagtggggttttccattgtaaatctacatgataa |
124 |
Q |
| |
|
|||||||||||||||| ||||||| ||| |||||| |||||| || |||||| |||||||| |
|
|
| T |
41566297 |
catcatatagttctcagccccaagatcatgtgggggtttccactgaaaatctgcatgataa |
41566237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 590
Target Start/End: Original strand, 21827551 - 21827606
Alignment:
| Q |
535 |
gctatttcctgtatatttgtcattccttcattaacttgtgaaacctttgcttctcc |
590 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||| |||||||||||| |||||| |
|
|
| T |
21827551 |
gctatttcttgtatattcatcattccgtcattaactagtgaaacctttggttctcc |
21827606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 590
Target Start/End: Original strand, 39603265 - 39603350
Alignment:
| Q |
505 |
tgtgtagcagagacatcctttatctccgcagctatttcctgtatatttgtcattccttcattaacttgtgaaacctttgcttctcc |
590 |
Q |
| |
|
||||||||||||||| ||||| |||| | |||||||| | |||||| ||||| ||||||||| |||||||||||| |||||| |
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| T |
39603265 |
tgtgtagcagagacaacctttctctcatctgctatttcttttatattcatcattttgtcattaactagtgaaacctttggttctcc |
39603350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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