View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16395_low_34 (Length: 278)
Name: NF16395_low_34
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 43389973 - 43389702
Alignment:
| Q |
1 |
ctcttttctccctgtaatctgtgaacactgccaagggcacctgttttagggtttggaaaagcataaaatatccgcctaattctctgatggacaagggcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43389973 |
ctcttttctccctgtaatctgtgaacactaccaagggcacctgttttagggtttggaaaagcataaaatatccgcctaattctctgatggacaagggcca |
43389874 |
T |
|
| Q |
101 |
tggcacacctgaaatcatagagaaaagcaaatatatcagaaaacagtgacttatgaggaaacattaaccatcagaaagtgaaatttggagagaatatctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43389873 |
tggcacacctgaaatcatagagaaaagcaaatatatcagaaaacagtgacttatgaggaaacattaaccatcagaaagtgaaatttggagagaatatctc |
43389774 |
T |
|
| Q |
201 |
catttcatgaggtacaaggcattcaagaagaaaaagagaatcaaaatgctactgacagctaacttcttttca |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43389773 |
catttcatgaggtacaaggcattcaagaagaaaaagagaatcaaaatgctactgacagctaacttcttttca |
43389702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University