View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_low_36 (Length: 273)
Name: NF16395_low_36
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 39656175 - 39656415
Alignment:
| Q |
20 |
aaatactcatgtattccattcagagaagcaagtgtttgatatcatctaatgagagttgagtatttccactaaatggagtactagactcatttgcattttg |
119 |
Q |
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| T |
39656175 |
aaatactcatgtattccattcagagaagcaagtgtttgatatcatctaatgagagttgagtatttccactaaatggagtactagactcatttgcattttg |
39656274 |
T |
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| Q |
120 |
tgatatgttctgagatccaattaataaaagataattaatactggaaattgttgtgtatcaaattacagaattgaaatcaaaaagacaaaaattactaaaa |
219 |
Q |
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| T |
39656275 |
tgatatgttctgagatccaattaataaaagataattaatactggaaattgttgtgtatcaaattacagaattgaaataaaaaagacaaaaattactaaaa |
39656374 |
T |
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| Q |
220 |
gttaagaacttgtgctgaaatcaggtgatgatatattcttc |
260 |
Q |
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| T |
39656375 |
gttaagaacttgtgctgaaatcaggtgatgatatattcttc |
39656415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 39671544 - 39671624
Alignment:
| Q |
55 |
ttgatatcatctaatgagagttgagtatttccactaaatggagtactagactcatttgcattttgtgatatgttctgagat |
135 |
Q |
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| T |
39671544 |
ttgatatcatccaatgagagttgagtatttccattaaatggagtactggactcatttgcattttgagatatgttctgagat |
39671624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 39660848 - 39660929
Alignment:
| Q |
144 |
taaaagataattaatactggaaattgtt-gtgtatcaaattacagaattgaaatcaaaaagacaaaaattactaaaagttaa |
224 |
Q |
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| T |
39660848 |
taaaagataaataatactggaaattgtttgtgtatcaaattacagaattgaaatcaaacagacaaaaattactaatagttaa |
39660929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 255
Target Start/End: Original strand, 39651330 - 39651448
Alignment:
| Q |
137 |
caattaataaaagataattaatactggaaattgttgtgtatcaaattacagaattgaaatcaaaa-agacaaaaattactaaaagttaagaacttgtgct |
235 |
Q |
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| T |
39651330 |
caattaataaaatataattaacatcggaaattgttgtat-tcaaattaaaggagtgaaataaaaaaagacaaaaattagtaacagttagcaacttgtgct |
39651428 |
T |
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| Q |
236 |
gaaatcaggtgatgatatat |
255 |
Q |
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| T |
39651429 |
taaatcaggtgataatatat |
39651448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 39660814 - 39660845
Alignment:
| Q |
142 |
aataaaagataattaatactggaaattgttgt |
173 |
Q |
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| T |
39660814 |
aataaaagataattaatactggaaattgttgt |
39660845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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