View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_low_37 (Length: 271)
Name: NF16395_low_37
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 46238464 - 46238729
Alignment:
| Q |
1 |
ggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctccagttgctga |
100 |
Q |
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| T |
46238464 |
ggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctccagttgctga |
46238563 |
T |
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| Q |
101 |
tgtaagttgtctattatgtgaatccctttactttcctccctttactcctatgaatatgcatgctatttctttgtttattcttgttgtggtactgttaacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238564 |
tgtaagttgtctattatgtgaatccctttactttcctctgtttactcctatgaatatgcatgctatttctttgtttattcttgttgtggtactgttaacg |
46238663 |
T |
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| Q |
201 |
aggaaaaggaggaaaacgttaaagaagttgtgaattttttagggtttttaattgatgtgaacttgt |
266 |
Q |
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| T |
46238664 |
aggaaaaggaggaaaacgttaaagatgttgtgaattttttagggtttttaattgatgtgaacttgt |
46238729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 2 - 266
Target Start/End: Complemental strand, 3456193 - 3455929
Alignment:
| Q |
2 |
gaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctccagttgctgat |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3456193 |
gaaagaaggagagaagacgaacgaagttgcgaagaagatgcaggaaacaatcgaagggcaatcgacggttatgaaaaacgttggagctccagttgctgat |
3456094 |
T |
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| Q |
102 |
gtaagttgtctattatgtgaatccctttactttcctccctttactcctatgaatatgcatgctatttctttgtttattcttgttgtggtactgttaacga |
201 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3456093 |
gtaagttgtctattatgtgaatccctttactttcttctgtttactcctaagaatatgcatgctatttctttgtttattcttgttgtggtactgttaacga |
3455994 |
T |
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| Q |
202 |
ggaaaaggaggaaaacgttaaagaagttgtgaattttttagggtttttaattgatgtgaacttgt |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3455993 |
ggaaaaggaggaaaacgttaaagaagttgtgaattttttagggttttaaattgatgtgaacttgt |
3455929 |
T |
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