View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_low_38 (Length: 268)
Name: NF16395_low_38
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 17026010 - 17025809
Alignment:
| Q |
29 |
atgagaagatgctatagaataaacagaatagaatctcgaagttatgtgaatattctaaaaccatttatgggtattattgaaatcgccaattggatttgaa |
128 |
Q |
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| T |
17026010 |
atgagaagatgctatagaataaacagaatagaatctcgaaggtatgtgaatattctaaaaccatttatgggtattattgaaatcgccaattggatttgac |
17025911 |
T |
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| Q |
129 |
gtccaaatcttaacgatgagtcaaaattctattgaaaaaagctaacatgtgttctaagacacaagttaatttatgggtattattgtaatcaatgcatttg |
228 |
Q |
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| T |
17025910 |
gtccaaatcttaacgatgagtcaaaattctattgaaaaaagctaacatgtgttctaagacacaagttaatttatgggtattattgtaatcaatgcatttg |
17025811 |
T |
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| Q |
229 |
aa |
230 |
Q |
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|| |
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| T |
17025810 |
aa |
17025809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 17003401 - 17003257
Alignment:
| Q |
17 |
atacaattgagcatgagaagatgctatagaataaacagaatagaatctcgaagttatgtgaatattctaaaaccatttatgggtattattgaaatcgcca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||| || |||||||| ||||||||||| |
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| T |
17003401 |
atacaattgagcatgagaagatgctatagaataaactgaatagaatctcgaaggtgtgtgaatattctgaaaccatatacgggtattaatgaaatcgcca |
17003302 |
T |
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| Q |
117 |
attggatttgaagtccaaatcttaacgatgagtcaaaattctatt |
161 |
Q |
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| T |
17003301 |
attggaatcaaagtccaaatcttaaagttgaatgaaaattctatt |
17003257 |
T |
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