View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_low_4 (Length: 542)
Name: NF16395_low_4
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 73 - 534
Target Start/End: Original strand, 40870242 - 40870703
Alignment:
| Q |
73 |
gatgtgtagtcgtaatgctgggtgtgcaccatcaccagggtactaccctagttccaaagtaagcactattagctttgatcaagaatttagaaatctatgg |
172 |
Q |
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| T |
40870242 |
gatgtgtagtcgtaatgctgggggtgcaccatcaccagggtactaccctagttccaaagtaagcactattagctttgatcaagaatttagaaatctatgg |
40870341 |
T |
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| Q |
173 |
ggagctcagcatcagaaactagaccatggatcattatcaatctggcttgactctaccacaggtatatgaaatcaaatgtctcaaatcatctaccaagttc |
272 |
Q |
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| T |
40870342 |
ggagctcagcatcagaaactagaccatggatcattatcaatctggcttgactctaccacaggtatatgaaatcaaatgtctcaaatcatctaccaagttc |
40870441 |
T |
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| Q |
273 |
acctaagtgaagggacatatatacataatcattaactcgaaaaataactcttgaaatttcaagcatttcataatttgtcgcatgtgtacataaattttgt |
372 |
Q |
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| T |
40870442 |
acctaagtgaagggacatatatacataatcattaactcgaaaaataactcttgaaatttcaagcatttcataatttgtcgcatgtgtacataaattttgt |
40870541 |
T |
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| Q |
373 |
tacaatattaatttctttcatctttgcactatatattactcttctcaattttagatgagccaaatatgattctaaatttgttaattgcgttctaaactct |
472 |
Q |
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| T |
40870542 |
tacaatattaatttctttcatctttgcactatgtattactcttctcaattttagatgagccaaatatgattctaaatttgttaattgcgttctaaactct |
40870641 |
T |
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| Q |
473 |
cgatgaagtaccttgtcgcacacgtgttcctacttaatataatttgagaaattagtctctgc |
534 |
Q |
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| T |
40870642 |
tgatgaagtaccttgtcgcacacgtgttcctacttaatataatttgagaaattagtctctgc |
40870703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 40870172 - 40870211
Alignment:
| Q |
3 |
ccctgcctctaattttcatgccagcatcactctgtatggc |
42 |
Q |
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| T |
40870172 |
ccctgcctctaattttcttgccatcatcactctgtatggc |
40870211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 43100162 - 43100111
Alignment:
| Q |
205 |
attatcaatctggcttgactctaccacaggtatatgaaatcaaatgtctcaa |
256 |
Q |
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| T |
43100162 |
attaacaatctggctcgactctacatcaggtatatgaaatcaaatgtctcaa |
43100111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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