View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_low_41 (Length: 263)
Name: NF16395_low_41
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 302070 - 302301
Alignment:
| Q |
18 |
atgaaaggaaaggagtcaaggacacaagatttatcgaggttcggatcaatttctcctacgtcctcacgtcctatttgatcttgaaatcacttactaccaa |
117 |
Q |
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| T |
302070 |
atgaaaggaaaggagtcaaggacacaagatttatcgaggttcggatcaatttctcctacgtcctcacgtcctatttgatcttgaaatcacttactaccaa |
302169 |
T |
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| Q |
118 |
tagcacgctttctacaagcaacaaactacaatacatatagctattgctaacag-aaaaaagaggtaaaggctagccatcacaatagctttataaagttgt |
216 |
Q |
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| T |
302170 |
tagcacgctttctacaagcaacaaactacaatacatatagctattgctaacagaaaaaaagaggtaaaggctagccatcacaatagctttataaagttgt |
302269 |
T |
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| Q |
217 |
taaacatttactaactaatttccatttgagat |
248 |
Q |
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| T |
302270 |
taaacatttactaactaattaccatttgagat |
302301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 22178402 - 22178249
Alignment:
| Q |
92 |
ttgatcttgaaatcacttactaccaatagcacgctttctacaagcaacaaactacaatacatatagctattgct---------aacagaaaaaagaggta |
182 |
Q |
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| T |
22178402 |
ttgatcttgaaatcacttaccaccaataccatgctttatacaagcaacaaactaagatttatgtagctactgcttctctctaaagcagaaaaaagaggca |
22178303 |
T |
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| Q |
183 |
aaggctagccatcacaatagctttataaagttgttaaacatttactaactaatt |
236 |
Q |
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| T |
22178302 |
aaggctagctatcacagtagctttacaaagttgttaggtatttactaactaatt |
22178249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 22178556 - 22178507
Alignment:
| Q |
35 |
aaggacacaagatttatcgaggttcggatcaatttctcctacgtcctcac |
84 |
Q |
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| T |
22178556 |
aaggacacaagatttatcgaggttcagatcaatttcttcttcgtcctcac |
22178507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 38250393 - 38250310
Alignment:
| Q |
166 |
aacagaaaaaa-gaggtaaaggctagccatcacaatagctttataaagttgttaaacatttactaactaatttccatttgagat |
248 |
Q |
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| T |
38250393 |
aacagaaaaaacgaggcaaaggctagctatcgcaatagctttataaagttgttaggcatttacttactaattaccatttgagat |
38250310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 37458937 - 37458986
Alignment:
| Q |
35 |
aaggacacaagatttatcgaggttcggatcaatttctcctacgtcctcac |
84 |
Q |
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| T |
37458937 |
aaggacacaagatttatcaaggttcgggtcaatttctcctacgtcctcac |
37458986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 38250683 - 38250639
Alignment:
| Q |
40 |
cacaagatttatcgaggttcggatcaatttctcctacgtcctcac |
84 |
Q |
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| T |
38250683 |
cacaagatttattgaggttcggatcaatttctcctacatcctcac |
38250639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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