View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_low_43 (Length: 249)
Name: NF16395_low_43
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 2435614 - 2435364
Alignment:
| Q |
1 |
tttgatgtcaataaacaaattgattaaaatctgccataaaaatgttaaaaacaaacctttttaaagttgcattgaggtctggttcttctttgtagttaaa |
100 |
Q |
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| T |
2435614 |
tttgatgtcaataaacaaattgattaaaatctgccataaaaatgttaaaaacagacctttttaaagttgcattgaggtctggttcttctttgtagttaaa |
2435515 |
T |
|
| Q |
101 |
ggcttcatcatatccaaatttattcttcaacagatctacctagtgtgccacaacaattcagttcatttaatgt--------------------aattgaa |
180 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
2435514 |
ggcttcatcatatccaaatttattcttcaacagatctacctagtgtgccacaacaattcagttcatttaatataattatccaaaaacttccaaaattgaa |
2435415 |
T |
|
| Q |
181 |
aatagtatttttgtagtataatcaaattaactaaatctcaccaagtgaaca |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2435414 |
aatagtatttttgtagtataatcaaattaactaaatctcaccaagtgaaca |
2435364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 2432174 - 2432006
Alignment:
| Q |
7 |
gtcaataaacaaattgattaaaat-ctgccataaaaatgttaaaaacaaacctttttaaagttgcattgaggtctggttcttctttgtagttaaaggctt |
105 |
Q |
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||||||||| || ||||||||||| ||||||||||| |||||| |||| |||||||||||| |||||||||||| |||||||||||||||||||| |||| |
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| T |
2432174 |
gtcaataaaaaatttgattaaaattctgccataaaattgttaataacagacctttttaaagctgcattgaggtcaggttcttctttgtagttaaatgctt |
2432075 |
T |
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| Q |
106 |
catcatatccaaatttattcttcaacagatctacctagtgtgccacaacaattcagttcatttaatgtaatt |
177 |
Q |
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| T |
2432074 |
catcatatccaaatttattcttcaaaagatccaccttgtgtgcc---ataattcagttcatttaatataatt |
2432006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 1459551 - 1459408
Alignment:
| Q |
6 |
tgtcaataaacaaattgatt--aaaatctgccataaaaatgttaaaaacaaacctttttaaagttgcattgaggtctggttcttctttgtagttaaaggc |
103 |
Q |
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|||||||||||||||| | | ||||||| |||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
1459551 |
tgtcaataaacaaattaaattaaaaatctaccataaaaatgttaaaaacagaccttttcaaagctgcattgaggtctggttcttctttgtagttaaaggc |
1459452 |
T |
|
| Q |
104 |
ttcatcatatccaaatttattcttcaacagatctacctagtgtg |
147 |
Q |
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| T |
1459451 |
ttcatcatatccaaatttatttttcaacaaatccacctggtgtg |
1459408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 2429258 - 2429115
Alignment:
| Q |
6 |
tgtcaataaacaaattgatt--aaaatctgccataaaaatgttaaaaacaaacctttttaaagttgcattgaggtctggttcttctttgtagttaaaggc |
103 |
Q |
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|||||||||||||||| | | ||||||| |||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
2429258 |
tgtcaataaacaaattaaattaaaaatctaccataaaaatgttaaaaacagaccttttcaaagctgcattgaggtctggttcttctttgtagttaaaggc |
2429159 |
T |
|
| Q |
104 |
ttcatcatatccaaatttattcttcaacagatctacctagtgtg |
147 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| |||| ||||| |
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|
| T |
2429158 |
ttcatcatatccaaatttatttttcaacaaatccacctggtgtg |
2429115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 2505712 - 2505798
Alignment:
| Q |
55 |
acctttttaaagttgcattgaggtctggttcttctttgtagttaaaggcttcatcatatccaaatttattcttcaacagatctacct |
141 |
Q |
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||||||| || ||||||||||||||| | |||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| |
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| T |
2505712 |
accttttcaatgttgcattgaggtcttgctcttctttgtagttaatggcttcatcgtatccaaatttattcttcaacagatccacct |
2505798 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 2512390 - 2512456
Alignment:
| Q |
75 |
aggtctggttcttctttgtagttaaaggcttcatcatatccaaatttattcttcaacagatctacct |
141 |
Q |
| |
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|||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| |
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| T |
2512390 |
aggtcttgttcttctttgtagttaatggcttcatcgtatccaaatttattcttcaacagatccacct |
2512456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 2516646 - 2516732
Alignment:
| Q |
55 |
acctttttaaagttgcattgaggtctggttcttctttgtagttaaaggcttcatcatatccaaatttattcttcaacagatctacct |
141 |
Q |
| |
|
|||||||||| | |||||||||||| |||||||||||||||||| ||||||||| |||||||||||||| || |||| ||| |||| |
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| T |
2516646 |
acctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttcatcgtatccaaatttattttttaacatatccacct |
2516732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 2431989 - 2431935
Alignment:
| Q |
174 |
aattgaaaatagtatttttgtagtataatcaaattaactaaatctcaccaagtgaa |
229 |
Q |
| |
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|||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| |
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| T |
2431989 |
aattgaaaatagtatttt-gtaatataaccaaattaactaaatctcaccaagtgaa |
2431935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 141
Target Start/End: Original strand, 2497089 - 2497179
Alignment:
| Q |
51 |
acaaacctttttaaagttgcattgaggtctggttcttctttgtagttaaaggcttcatcatatccaaatttattcttcaacagatctacct |
141 |
Q |
| |
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||||||||||| |||| ||||| |||||| || ||||| |||||||| || || ||||| ||||||||||||||||||| ||||| |||| |
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| T |
2497089 |
acaaaccttttcaaagctgcatcgaggtcaggctcttccttgtagttgaaacctccatcaaatccaaatttattcttcaaaagatccacct |
2497179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 6742179 - 6742222
Alignment:
| Q |
174 |
aattgaaaatagtatttttgtagtataatcaaattaactaaatct |
218 |
Q |
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||||||||||| |||||||||| |||||||||||||||| ||||| |
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| T |
6742179 |
aattgaaaataatatttttgta-tataatcaaattaactcaatct |
6742222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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