View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_low_45 (Length: 244)
Name: NF16395_low_45
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 24708561 - 24708762
Alignment:
| Q |
1 |
caatatattgggatacgcttatagcaatgaagaagaagttgtcaaatatgtagcaactatgttgccaattattgcagtatccaactttctggatggacta |
100 |
Q |
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| T |
24708561 |
caatatattgggatacgcttatagcaatgaagaagaagttgtcaaatatgtagcaactatgttgcctattattgcagtatccaactttctggatggactt |
24708660 |
T |
|
| Q |
101 |
caatgtgttctttcaggtttctcttattcccaataacttttaattctatgtcttcatagtggccgagtaaaaaacaatgatagatacatatgggagcttc |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||| ||| |
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| T |
24708661 |
caatgtgttctttcaggtttctcttattccaaataacgtttaatttattgtcttcatagtggccgattaaaaaacaatgatagagacatatgggagtttc |
24708760 |
T |
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| Q |
201 |
ta |
202 |
Q |
| |
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|| |
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| T |
24708761 |
ta |
24708762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 30511333 - 30511132
Alignment:
| Q |
1 |
caatatattgggatacgcttatagcaatgaagaagaagttgtcaaatatgtagcaactatgttgccaattattgcagtatccaactttctggatggacta |
100 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| || |
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| T |
30511333 |
caatatatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagtatccaactttctggatggaata |
30511234 |
T |
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| Q |
101 |
caatgtgttctttcaggtttctcttattcccaataacttttaattctatgtcttcatagtggccgagtaaaaaacaatgatagatacatatgggagcttc |
200 |
Q |
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||| ||||||||||||||||||||| ||||| ||||||||||||| | | ||||||||| | | |||| |||||||| |||||| ||| ||||||||||| |
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| T |
30511233 |
caaagtgttctttcaggtttctcttcttccctataacttttaatt-tctttcttcatagagactgagtcaaaaacaacgatagagacaaatgggagcttc |
30511135 |
T |
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| Q |
201 |
taa |
203 |
Q |
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||| |
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| T |
30511134 |
taa |
30511132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 30483657 - 30483551
Alignment:
| Q |
14 |
tacgcttatagcaatgaagaagaagttgtcaaatatgtagcaactatgttgccaattattgcagtatccaactttctggatggactacaatgtgttcttt |
113 |
Q |
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|||||||||||||||||||||||||| || || ||||||||||||||| |||||||| |||| |||||| |||| || ||||| | ||| |||||||| |
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| T |
30483657 |
tacgcttatagcaatgaagaagaagtggtaaattatgtagcaactatgatgccaattcttgccgtatcccacttactagatggcatgcaagctgttcttt |
30483558 |
T |
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| Q |
114 |
caggttt |
120 |
Q |
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||||||| |
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| T |
30483557 |
caggttt |
30483551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 30501632 - 30501554
Alignment:
| Q |
1 |
caatatattgggatacgcttatagcaatgaagaagaagttgtcaaatatgtagcaactatgttgccaattattgcagta |
79 |
Q |
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|||||||| |||||| ||||||||||||||||||||||| |||||||||||||||| |||| ||||| || |||||||| |
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| T |
30501632 |
caatatatggggatatgcttatagcaatgaagaagaagtggtcaaatatgtagcaaatatgatgccacttcttgcagta |
30501554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 30475736 - 30475659
Alignment:
| Q |
35 |
gaagttgtcaaatatgtagcaactatgttgccaattattgcagtatccaactttctggatggactacaatgtgttctt |
112 |
Q |
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|||||||||||| | |||||| |||||| |||||| ||||||||||| ||||||||||| ||||||| |||||||| |
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| T |
30475736 |
gaagttgtcaaacaaatagcaattatgttaccaattcttgcagtatcctactttctggattcactacaaagtgttctt |
30475659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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