View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16395_low_47 (Length: 242)
Name: NF16395_low_47
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_low_47 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 34752196 - 34752423
Alignment:
| Q |
19 |
gaaccatcaacgctgaatatatattattaatttacacattcttaatca---tcatcatcatcacatagaccatgttagttaccctttcttttttaccaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34752196 |
gaaccatcaacgctgaatatatattattaatttacacattcttaatcatcatcatcatcatcacatagaccatgttagttaccctttcttttttaccaat |
34752295 |
T |
|
| Q |
116 |
ctttacaatgtagtcattcttaataacttaatacaaagttattcccaatttcccaacaatttggtactaaaatttgattttgtaggt-cgctcatccact |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34752296 |
ctttacaatgtagtcattcttaataacttaatacaaagttagtcccaatttcccaacaatttggtactaaaatttgattttgtaggtccgctcatccact |
34752395 |
T |
|
| Q |
215 |
taaagaaagaatgctttgtttattttgt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
34752396 |
taaagaaagaatgctttgtttattttgt |
34752423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University