View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16395_low_5 (Length: 527)

Name: NF16395_low_5
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16395_low_5
NF16395_low_5
[»] chr1 (8 HSPs)
chr1 (20-514)||(47636167-47636661)
chr1 (362-500)||(47287585-47287723)
chr1 (362-468)||(47574592-47574698)
chr1 (390-468)||(47607328-47607406)
chr1 (32-153)||(47287192-47287313)
chr1 (327-392)||(47568239-47568304)
chr1 (308-465)||(47711620-47711777)
chr1 (344-492)||(6497761-6497909)
[»] chr4 (4 HSPs)
chr4 (395-471)||(36290572-36290648)
chr4 (332-418)||(36376261-36376347)
chr4 (332-418)||(36429306-36429392)
chr4 (341-397)||(36389512-36389568)
[»] chr2 (4 HSPs)
chr2 (422-468)||(2712576-2712622)
chr2 (422-468)||(2717100-2717146)
chr2 (422-468)||(2723722-2723768)
chr2 (392-468)||(2698501-2698577)
[»] chr5 (3 HSPs)
chr5 (395-472)||(454539-454616)
chr5 (344-381)||(28419879-28419916)
chr5 (344-381)||(28433112-28433149)
[»] chr3 (1 HSPs)
chr3 (326-431)||(36067108-36067213)


Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 20 - 514
Target Start/End: Original strand, 47636167 - 47636661
Alignment:
Q  20 agcttgttgcccaacttcaacatagaaatttagctaggcttctaggattttgcttggaaagagaagaaaagatacttgtttatgaatttgtggccaacaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47636167 agcttgttgcccaacttcaacatagaaatttagctaggcttctaggattttgcttggaaagagaagaaaagatacttgtttatgaatttgtggccaacaa 47636266  T
Q  120 aagcctcgactatattctttttggtaggtgcatcttatctgaactctttatagtgcacacttcacatgagaaaactgtgcaattgaattcttttgtcaaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47636267 aagcctcgactatattctttttggtaggtgcatcttatctgaactctttatagtgcacacttcacatgagaaaactgtacaattgaattcttttgtcaaa 47636366  T
Q  220 tttctgtttcattaaactggtttacttttatcggggatcatagtcttatgaatagaaaatttattcagatcctgaaaaacaaaggctgttggattggaca 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47636367 tttctgtttcattaaactggtttacttttatcggggatcatagtcttatgaatagaaaatttatgcagatcctgaaaaacaaaggctgttggattggaca 47636466  T
Q  320 aggcgttacaagattattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaaca 419  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47636467 aggcgttacaagattattggagggattgcgcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaaca 47636566  T
Q  420 tattgttggatggagatatgaatccaaaaatctcggactttggcatggcaaaattattcggagtggatcaaactcaaggaaataccagtataatc 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47636567 tattgttggatggagatatgaatccaaaaatctcggactttggcatggcaaaattattcggagtggatcaaactcaaggaaataccagtagaatc 47636661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 500
Target Start/End: Original strand, 47287585 - 47287723
Alignment:
Q  362 tatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttg 461  Q
    |||||||| ||||||||| | |||| ||| || ||||| |||||||||||||| || ||||| || ||||   || | ||||| ||||| || || ||||    
T  47287585 tatcttcacgaagattctcgacttagaatcatacatcgcgatcttaaagctagtaatatattattagatgagaatttaaatcccaaaatttcagattttg 47287684  T
Q  462 gcatggcaaaattattcggagtggatcaaactcaaggaa 500  Q
    | ||||||| | |||| || || |||||||||| |||||    
T  47287685 ggatggcaagaatatttggtgttgatcaaactcgaggaa 47287723  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 468
Target Start/End: Original strand, 47574592 - 47574698
Alignment:
Q  362 tatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttg 461  Q
    ||||| |||||||||||| | || ||||| || ||||||||||| ||| ||||| |  |  |||| |||||  |||||||||||||||| || || ||||    
T  47574592 tatctccatgaagattctcgcctcaaaatcatacatcgtgatctgaaacctagcgatgtcctgttagatggtaatatgaatccaaaaatatcagattttg 47574691  T
Q  462 gcatggc 468  Q
    |||||||    
T  47574692 gcatggc 47574698  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 468
Target Start/End: Original strand, 47607328 - 47607406
Alignment:
Q  390 ttattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggc 468  Q
    |||| ||||||||||||||| |||| || || || || |||| | |||||||||| |||||||| || |||||||||||    
T  47607328 ttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggc 47607406  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 47287192 - 47287313
Alignment:
Q  32 aacttcaacatagaaatttagctaggcttctaggattttgcttggaaagagaagaaaagatacttgtttatgaatttgtggccaacaaaagcctcgacta 131  Q
    |||| ||||| |||||| | | |||| |||| || |||||||||||  | ||||||||||| ||  ||||||||||  || |||||||||| || |||||    
T  47287192 aactacaacacagaaatcttgttaggattcttgggttttgcttggatggtgaagaaaagatgctcatttatgaattcatgcccaacaaaagtctagacta 47287291  T
Q  132 tattctttttggtaggtgcatc 153  Q
    | |||| ||||||  |||||||    
T  47287292 ttttctatttggtgtgtgcatc 47287313  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 392
Target Start/End: Original strand, 47568239 - 47568304
Alignment:
Q  327 acaagattattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaatta 392  Q
    |||||||||||||||| ||||||||||| ||||  ||||| ||||| |||||  | ||||||||||    
T  47568239 acaagattattggaggaattgctcgaggaattctttatctccatgaggattcacgccttaaaatta 47568304  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 465
Target Start/End: Complemental strand, 47711777 - 47711620
Alignment:
Q  308 ttggattggacaaggcgttacaagattattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatctta 407  Q
    |||||||||  |||||| ||||| || |||||||| || ||| ||||| |||  || |||||||| ||||||   |||   ||||| |||||||||||||    
T  47711777 ttggattgggaaaggcgctacaaaatcattggaggtatagctagaggccttctttaccttcatgaggattctcaacttcgtattatacatcgtgatctta 47711678  T
Q  408 aagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcat 465  Q
    |||| || |||||  | ||||||| | |  ||||||| ||||| || |||||||||||    
T  47711677 aagcaagtaacattctcttggatgaaaagttgaatcctaaaatatcagactttggcat 47711620  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 492
Target Start/End: Complemental strand, 6497909 - 6497761
Alignment:
Q  344 attgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatc 443  Q
    ||||||||||||||||  || ||||| || |||||| | ||    ||||||||||||||||| ||||| || |||||  | || |||| ||| |||||||    
T  6497909 attgctcgaggcattctttaccttcacgaggattctcgactgcgcattattcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatc 6497810  T
Q  444 caaaaatctcggactttggcatggcaaaattattcggagtggatcaaac 492  Q
    | || || || || ||||||||||||| | |||| || ||||| |||||    
T  6497809 ctaagatatctgattttggcatggcaagactatttggtgtggaccaaac 6497761  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 471
Target Start/End: Original strand, 36290572 - 36290648
Alignment:
Q  395 catcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggcaaa 471  Q
    ||||| ||||| ||||| |||||||| |||||||||| | |||||||||||||||| || ||||||||| |||||||    
T  36290572 catcgagatctaaaagcaagcaacattttgttggatgaaaatatgaatccaaaaatttcagactttggcttggcaaa 36290648  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 418
Target Start/End: Original strand, 36376261 - 36376347
Alignment:
Q  332 attattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaac 418  Q
    |||||| | ||||||||||||||  ||  |||||||||| ||||||| ||||| ||||| |||||| | ||||| ||||| ||||||    
T  36376261 attatttgtgggattgctcgaggtgttttatatcttcatcaagattcaaggctgaaaataattcatagagatctaaaagccagcaac 36376347  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 418
Target Start/End: Original strand, 36429306 - 36429392
Alignment:
Q  332 attattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaac 418  Q
    |||||| | ||||||||||||||  ||  |||||||||| ||||||| ||||| ||||| |||||| | ||||| ||||| ||||||    
T  36429306 attatttgtgggattgctcgaggtgttttatatcttcatcaagattcaaggctgaaaataattcatagagatctaaaagccagcaac 36429392  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 397
Target Start/End: Original strand, 36389512 - 36389568
Alignment:
Q  341 gggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcat 397  Q
    ||||||||||||||| ||  |||||||||| ||||||| ||||| ||||| ||||||    
T  36389512 gggattgctcgaggcgttttatatcttcatcaagattcaaggctgaaaatcattcat 36389568  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 468
Target Start/End: Complemental strand, 2712622 - 2712576
Alignment:
Q  422 ttgttggatggagatatgaatccaaaaatctcggactttggcatggc 468  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||    
T  2712622 ttgttggatggagaaatgaatccaaaaatatctgactttggcatggc 2712576  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 468
Target Start/End: Complemental strand, 2717146 - 2717100
Alignment:
Q  422 ttgttggatggagatatgaatccaaaaatctcggactttggcatggc 468  Q
    ||||||||||||||  ||||||||||||| || ||||||||||||||    
T  2717146 ttgttggatggagaactgaatccaaaaatatccgactttggcatggc 2717100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 468
Target Start/End: Complemental strand, 2723768 - 2723722
Alignment:
Q  422 ttgttggatggagatatgaatccaaaaatctcggactttggcatggc 468  Q
    ||||||||||||||  ||||||||||||| || ||||||||||||||    
T  2723768 ttgttggatggagaactgaatccaaaaatatccgactttggcatggc 2723722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 468
Target Start/End: Complemental strand, 2698577 - 2698501
Alignment:
Q  392 attcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggc 468  Q
    |||||||| ||||| ||||| || ||||| ||||| |||| | | |||||||||||||| || ||||||||| ||||    
T  2698577 attcatcgagatctaaaagcaagtaacattttgttagatgaaaacatgaatccaaaaatatctgactttggcttggc 2698501  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 395 - 472
Target Start/End: Complemental strand, 454616 - 454539
Alignment:
Q  395 catcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggcaaaa 472  Q
    ||||||||||| ||| ||||||| |||||||| |||    |||||||||||||||| || |||||||| |||||||||    
T  454616 catcgtgatctcaaacctagcaatatattgttagataagaatatgaatccaaaaatatcagactttggtatggcaaaa 454539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 381
Target Start/End: Original strand, 28419879 - 28419916
Alignment:
Q  344 attgctcgaggcattcaatatcttcatgaagattctag 381  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  28419879 attgctcgaggaattcaatatcttcatcaagattctag 28419916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 381
Target Start/End: Original strand, 28433112 - 28433149
Alignment:
Q  344 attgctcgaggcattcaatatcttcatgaagattctag 381  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  28433112 attgctcgaggaattcaatatcttcatcaagattctag 28433149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 431
Target Start/End: Complemental strand, 36067213 - 36067108
Alignment:
Q  326 tacaagattattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgt 425  Q
    |||||||||||  |||||||||| ||||| ||||  ||||| ||||| ||||||   || ||||| || ||  ||||||||||| | |||||||| ||||    
T  36067213 tacaagattataagagggattgcacgaggtattctttatctacatgaggattctcatctaaaaatcatacactgtgatcttaaacccagcaacattttgt 36067114  T
Q  426 tggatg 431  Q
    ||||||    
T  36067113 tggatg 36067108  T

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