View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_low_6 (Length: 518)
Name: NF16395_low_6
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 5 - 319
Target Start/End: Complemental strand, 47928176 - 47927862
Alignment:
| Q |
5 |
gcagcaagtggtcgatttggggccgcatgttacatgggtagtgtgagaattaaagattattcacaagctcttaagtatccatcatttgtaagtacacatg |
104 |
Q |
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| T |
47928176 |
gcagcaagtggtcgatttggggccgcatgttacatgggtagtgtgagaattaaagattattcacaagctcttaagtatccatcatttgtaagtacacatg |
47928077 |
T |
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| Q |
105 |
ctgcagaaccatattgttacagtgccctcaatgatgctccatatggaaaagatcctgtattctactttggtggagctggaagaaaccctcctttatgtgc |
204 |
Q |
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| T |
47928076 |
ctgcagaaccatattgttacagtgccctcaatgacgctccatatggaaaagatcctgtattctactttggaggagctggaagaaaccctcctttatgtgc |
47927977 |
T |
|
| Q |
205 |
ttgaaatcagatattgattaactatataatatataatgtgtttgatgaacaataaatatgtttcttgcaagtttactttcttgttgtttcttatcaaatc |
304 |
Q |
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| T |
47927976 |
ttgaaatcagatattgattaactatataatatataatgtgtttgatgaacaataaatatgtttcttgcaagtttactttcttgttgtttcttatcaaatc |
47927877 |
T |
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| Q |
305 |
attcatttcatcata |
319 |
Q |
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||||| ||||||||| |
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| T |
47927876 |
attcaattcatcata |
47927862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 47918400 - 47918235
Alignment:
| Q |
19 |
atttggggccgcatgttacatgggtagtgtgagaattaaagattattcacaagctcttaagtatccatcatttgtaagtacacatgctgcagaaccatat |
118 |
Q |
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| T |
47918400 |
atttggggttgcatgttacatgggtggtgtgagaatcaaagataattcgcaagcacttaagtacccatcatttgtaagtacacatgctatagaaccatat |
47918301 |
T |
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| Q |
119 |
tgttacagtgccctcaatgatgctccatatggaaaagatcctgtattctactttggtggagctgga |
184 |
Q |
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| T |
47918300 |
tgttacagtgccttcaatgatgctccatatggaaaagatcctgtattctattttggaggtgctgga |
47918235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 381 - 501
Target Start/End: Complemental strand, 47927800 - 47927680
Alignment:
| Q |
381 |
gcacatatcttataagctgcgagagtgtattgttaatagttaaatgacatataagagagatgccaatttaatatacacctccctttacgaagatattgtt |
480 |
Q |
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| T |
47927800 |
gcacatatcttataagctgcgagactgtattgtcaatagttaaatgacatataagagagatgccaatttaatatacatctccctttacgaagatattgtt |
47927701 |
T |
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| Q |
481 |
acaaatttaatctctagtatg |
501 |
Q |
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| T |
47927700 |
acaaatttaatctctattatg |
47927680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 47935608 - 47935441
Alignment:
| Q |
7 |
agcaagtggtcgatttggggccgcatgttacatgggtagtgtgagaattaaagattattcacaagctcttaagtatccatcatttgtaagtacacatgct |
106 |
Q |
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| T |
47935608 |
agcaagtggtcgatttgggttcgcatgttacataagcaatgttagaattaaggattattcaaaagctctcaaatatccagcatatgtaactacttatgct |
47935509 |
T |
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| Q |
107 |
gcagaaccatattgttacagtgccctcaatgatgctccatatggaaaagatcctgtattctactttgg |
174 |
Q |
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| T |
47935508 |
gcagaaccatattgttacagtgccctcaatgaagctccatatggacaagatcctgtattttattttgg |
47935441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 5 - 167
Target Start/End: Complemental strand, 47946752 - 47946590
Alignment:
| Q |
5 |
gcagcaagtggtcgatttggggccgcatgttacatgggtagtgtgagaattaaagattattcacaagctcttaagtatccatcatttgtaagtacacatg |
104 |
Q |
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||||||||||||||||||||| ||||||||||||| | |||||||||||| ||||||||| || |||| ||||||||| ||||||||||||| ||| |
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| T |
47946752 |
gcagcaagtggtcgatttgggttcgcatgttacatgacaaatgtgagaattaaggattattcagaaactctcaagtatccacaatttgtaagtacatatg |
47946653 |
T |
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| Q |
105 |
ctgcagaaccatattgttacagtgccctcaatgatgctccatatggaaaagatcctgtattct |
167 |
Q |
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| |||||||| || ||||||||||||||||| |||| || |||||||||||||||||| |||| |
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| T |
47946652 |
cagcagaaccttactgttacagtgccctcaacgatgttcaatatggaaaagatcctgtcttct |
47946590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 37431956 - 37432026
Alignment:
| Q |
240 |
atgtgtttgatgaacaataaatatgtttcttgcaagtttactttcttgttgtttcttatcaaatcattcat |
310 |
Q |
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| T |
37431956 |
atgtgtttgatgaacaataaatatgtttcttgcaagtttactttcttgttgtttcttatctaatcattcat |
37432026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 47 - 174
Target Start/End: Complemental strand, 47909206 - 47909079
Alignment:
| Q |
47 |
gtgagaattaaagattattcacaagctcttaagtatccatcatttgtaagtacacatgctgcagaaccatattgttacagtgccctcaatgatgctccat |
146 |
Q |
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||||||||||||||||| ||||||||||||||||| ||| ||| |||| |||||||||| ||| || | |||||||||||||| ||| |||||||| |
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| T |
47909206 |
gtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgttacagtgccctaaatattgctccat |
47909107 |
T |
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| Q |
147 |
atggaaaagatcctgtattctactttgg |
174 |
Q |
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|||||||||| ||||| |||| |||||| |
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| T |
47909106 |
atggaaaagaccctgtgttcttctttgg |
47909079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 433
Target Start/End: Original strand, 37432100 - 37432148
Alignment:
| Q |
385 |
atatcttataagctgcgagagtgtattgttaatagttaaatgacatata |
433 |
Q |
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|||||||||||| |||||| |||||||||||||||||||| |||||||| |
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| T |
37432100 |
atatcttataagatgcgagtgtgtattgttaatagttaaacgacatata |
37432148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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