View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16395_low_9 (Length: 468)
Name: NF16395_low_9
Description: NF16395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16395_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Complemental strand, 39930566 - 39930126
Alignment:
| Q |
18 |
agagatcactatcatttcaccaatcacaaaccaatccatttgatcatgtcttccatagtccacaattgttcttgggaaacatattgtgcccttttggatg |
117 |
Q |
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| T |
39930566 |
agagatcactatcatctcaccaatcacaaaccaatccatttgatcatgtcttccatagtccacaattattcttgggaaacatattgtgcccttttggatg |
39930467 |
T |
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| Q |
118 |
aagatgaggtaagattttatcagaccttagaacaagtgcacattggggattatatttgtattaaggttcgtgttagacacgaactatgtgtcaatccccc |
217 |
Q |
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| T |
39930466 |
aagatgaggtaagattttatcagaccttagaacaagtgcacattggggattatatttgtattaaggttcgtgttagacacgaactatgtgtcaatccccc |
39930367 |
T |
|
| Q |
218 |
acaatatccttctttaatattaccatttgattgggttttttatgcgcaaaccatgtttgtaccttatcatgaatttcatcaaaatagtctattatacatg |
317 |
Q |
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| T |
39930366 |
aaaatatccttctttaatattaccatttgattgggttttttatgcgcaaaccatgtttgtaccttatcatgaatttcatcaaaatagtctattatacatg |
39930267 |
T |
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| Q |
318 |
caaacttatttttctaatgctatcatcccatatgatgcgatgtactcatgcatgccacatgtaatgacatatattgataatgtacgaaactcttacccca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39930266 |
caaacttatttttctaatgctatcatcccatatgatgcgatgtactcatgcatgccacatgtaatgacatatattgataatgtacgaaactcttacccca |
39930167 |
T |
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| Q |
418 |
atcctcattatgaaagtccccgaattcgtgtgctccctttg |
458 |
Q |
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| T |
39930166 |
atcctcattatgaaagtccccgaattcgtgtgctccctttg |
39930126 |
T |
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