View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16396_low_2 (Length: 346)
Name: NF16396_low_2
Description: NF16396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16396_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 45230307 - 45229978
Alignment:
| Q |
1 |
tactcgcaattctgaccctccaccttcggaagcaagaaatcttatgcacaatgaacatgaaagaagtttctacttgtatgatgatatgagagtagtgttt |
100 |
Q |
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| T |
45230307 |
tactcgcaattctgaccctccaccttcggaagcaagaaatcttatgcacaatgaacatgaaagaagtttctacttgtatgatgatatgagagtagtgttt |
45230208 |
T |
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| Q |
101 |
cctcagcgtcactcggattctgatgagggcaaggtatgcaaaaatatacatgaaagtggttttaatgcctcatttgtttatgttacttaatgattatttc |
200 |
Q |
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| T |
45230207 |
cctcagcgtcactcggattctgatgagggcaaggtatgcaaaaatatacatgaaagtggttttaatgcctcatttgtttatgttacttaatgattatttc |
45230108 |
T |
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| Q |
201 |
atgttgcagttgaatgtggaatatcatttcccatctaatccgaaatactttgacatcagcagctaaaatgtcaatgcatctctgtcaatggttttgtaca |
300 |
Q |
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| T |
45230107 |
atgttgcagttgaatgtggaatatcatttcccatctaatccgaaatactttgacatcagcagctaaaatgtcaatgcatctctgtcaatggttttgtaca |
45230008 |
T |
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| Q |
301 |
tataattgtaaatattgtatgtatacaatt |
330 |
Q |
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| T |
45230007 |
tataattgtaaatattgtatgcatacaatt |
45229978 |
T |
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