View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16397_high_1 (Length: 630)
Name: NF16397_high_1
Description: NF16397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16397_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 20 - 609
Target Start/End: Original strand, 38503289 - 38503880
Alignment:
| Q |
20 |
tgaaactggtgggtgtcctcatgctgctattcgcgaggatattagtattaatcttggtccacttgaagagctttccaatctttataaagctgatttgctt |
119 |
Q |
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| T |
38503289 |
tgaaactggtgggtgtcctcatgctgctattcgcgaggatattagtattaatcttggtccacttgaagagctttccaatctttataaagctgatttgctt |
38503388 |
T |
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| Q |
120 |
ctttgtgaatccgggggaggtattgttaatttattagtattactcacttaaataatctgttacttgtttctaattgagttaaaaagactgaatcactagt |
219 |
Q |
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| T |
38503389 |
ctttgtgaatccggtggaggtattgttaatttattagtattactcacttaaataatttgttagttgtttctaattgagttaaaaagactgaatcactagt |
38503488 |
T |
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| Q |
220 |
ttagtgtgt--ttcataacacaatggttttgccaaaattacggtgagccaacaggattatgctaaactgactgcaaattcaaacatgaattttgtgtgtt |
317 |
Q |
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| T |
38503489 |
ttagtgtgtgtttgatatcacaatggttttgccaaaattacggtgagccaacaggattatgctaaactgactgcaaattcaaacatgaattttgtgtgtt |
38503588 |
T |
|
| Q |
318 |
tggtttcatagtggaaagagtcaatttttgtcattgcataaccaaaagacatgtctcttaaactataagtatcaaaaatttagtctctcaaactagctga |
417 |
Q |
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| T |
38503589 |
tggtttcatagtggaaagagtcaatttttgtcattgcataaccaaaagacatgtctcttaaactataagtatcgaaaatttagtctctcaaactagctga |
38503688 |
T |
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| Q |
418 |
aattgtcttcgaaattgaaaaactttgatcatattattactcttggatccataagtttggttcgggaaattgctgtggatgaactacttcaatctgac-t |
516 |
Q |
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| T |
38503689 |
atttgtcttcgaaattgaaaaactttgatcatattattactcttggatccataagtttggtttgggaaattgctgtggatgaactacttcaatc-gacgg |
38503787 |
T |
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| Q |
517 |
tttttggttttagataacattttgaaattttattaatttgagagatcaaattacgcgtctcctacaatctcaggggctaaaatgaagatctac |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38503788 |
tttttggttttagataacattttgaaattttattaatttgagagatcaaattacgcgtcacctacaatctcaggggctaaaatgaagatctac |
38503880 |
T |
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