View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16397_high_13 (Length: 211)
Name: NF16397_high_13
Description: NF16397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16397_high_13 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 5928114 - 5928209
Alignment:
| Q |
1 |
cttaacaggttttagatgtctgtgttttttgcttcagatttgttgtgcacttatcctccataagctctatatttcagttttaactgtttctatata |
96 |
Q |
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| T |
5928114 |
cttaacaggttttagatgtctgtgttttttgcttcagatttgttgtgcacttatcctcaataaactctatatttcagttttaagtggttctatata |
5928209 |
T |
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Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 20087911 - 20087989
Alignment:
| Q |
25 |
ttttttgcttcagatttgttgtgcacttatcctccataagctctatatttcagttttaactgtttctatatataagctcta |
105 |
Q |
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| T |
20087911 |
ttttttccttcagatttgttgttcacctgtcctccataagctctatatttcagttttaactggt--tatatataagctcta |
20087989 |
T |
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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 22714674 - 22714614
Alignment:
| Q |
25 |
ttttttgcttcagatttgttgtgcacttatcctccataagctctatatttcagttttaact |
85 |
Q |
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| T |
22714674 |
ttttttgcttcggatttgttgttcacttatcctccataaactctatatttcagttttaact |
22714614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 22990551 - 22990611
Alignment:
| Q |
25 |
ttttttgcttcagatttgttgtgcacttatcctccataagctctatatttcagttttaact |
85 |
Q |
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| T |
22990551 |
ttttttgcttcggatttgttgttcacttatcctccataaactctatatttcagttttaact |
22990611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 28948931 - 28948871
Alignment:
| Q |
25 |
ttttttgcttcagatttgttgtgcacttatcctccataagctctatatttcagttttaact |
85 |
Q |
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||||||||||| |||||||||| |||||||||||| ||| ||||||||||||||||||||| |
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| T |
28948931 |
ttttttgcttcggatttgttgttcacttatcctccttaaactctatatttcagttttaact |
28948871 |
T |
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Target: scaffold0009 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 200547 - 200487
Alignment:
| Q |
25 |
ttttttgcttcagatttgttgtgcacttatcctccataagctctatatttcagttttaact |
85 |
Q |
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||||||||||| |||||||||| |||||||||||||||| || |||||||||||||||||| |
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| T |
200547 |
ttttttgcttcggatttgttgttcacttatcctccataaactatatatttcagttttaact |
200487 |
T |
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