View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16397_high_8 (Length: 286)
Name: NF16397_high_8
Description: NF16397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16397_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 42957414 - 42957312
Alignment:
| Q |
139 |
cttgtaatcaatagcagaagaatatccatgttgccgatgttttcattcctcgttgaatcaagtttagaccattgtcacagtaaaacccaccaaaaaggag |
238 |
Q |
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| T |
42957414 |
cttgtaatcaatagcagaagaatatccatgttgccgatgttttcattcctcgttgaatcaagtttagaccattgtcatagtaaaacccaccaaaaaggag |
42957315 |
T |
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| Q |
239 |
gaa |
241 |
Q |
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||| |
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| T |
42957314 |
gaa |
42957312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 42957538 - 42957495
Alignment:
| Q |
15 |
aatatgaaggagtaaaacctgtaatcaatagcagcaatccaagg |
58 |
Q |
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| T |
42957538 |
aatatgaaggagcaaaacctgtaatcaatagcagcaatccaagg |
42957495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 23220948 - 23220907
Alignment:
| Q |
173 |
cgatgttttcattcctcgttgaatcaagtttagaccattgtc |
214 |
Q |
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| T |
23220948 |
cgatgttttcatccctcgttgaatcaagttttgacctttgtc |
23220907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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