View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16397_low_15 (Length: 207)

Name: NF16397_low_15
Description: NF16397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16397_low_15
NF16397_low_15
[»] chr5 (16 HSPs)
chr5 (24-137)||(30748119-30748232)
chr5 (18-137)||(30340053-30340173)
chr5 (73-128)||(30058563-30058618)
chr5 (136-187)||(29870834-29870885)
chr5 (137-187)||(17419295-17419345)
chr5 (137-187)||(30398663-30398713)
chr5 (137-187)||(30434471-30434521)
chr5 (147-187)||(30243776-30243816)
chr5 (147-187)||(30339929-30339969)
chr5 (136-187)||(30481980-30482031)
chr5 (29-86)||(29851761-29851818)
chr5 (136-185)||(30058936-30058985)
chr5 (142-187)||(30748297-30748342)
chr5 (136-180)||(30678644-30678688)
chr5 (147-187)||(29851958-29851998)
chr5 (104-136)||(30481888-30481920)
[»] chr7 (1 HSPs)
chr7 (139-187)||(26705914-26705962)
[»] chr4 (1 HSPs)
chr4 (147-187)||(20298151-20298191)
[»] chr1 (1 HSPs)
chr1 (147-187)||(7098005-7098045)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 5e-58; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 30748119 - 30748232
Alignment:
Q  24 gggggatgggttccaaagaagtcaagattgagaatatataaaaatatttttgaataaaaataaagtgaattgaggcaaataaggggaaatagagatctta 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30748119 gggggatgggttccaaagaagtcaagattgagaatatataaaaatatttttgaataaaaataaagtgaattgaggcaaataaggggaaatagagatctta 30748218  T
Q  124 ccagtaaaattgaa 137  Q
    ||||||||||||||    
T  30748219 ccagtaaaattgaa 30748232  T

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Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 30340173 - 30340053
Alignment:
Q  18 cattctgggggatgggttccaaagaagtcaagattgagaa-tatataaaaatatttttgaataaaaataaagtgaattgaggcaaataaggggaaataga 116  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  30340173 cattctgggggatgggttccaaagaagtcaagattgagaaatatataaaaatacttttgaataaaaataaagtgaattgaggcagataaggggaaataga 30340074  T
Q  117 gatcttaccagtaaaattgaa 137  Q
    |||||||||||||||||||||    
T  30340073 gatcttaccagtaaaattgaa 30340053  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 30058563 - 30058618
Alignment:
Q  73 ttgaataaaaataaagtgaattgaggcaaataaggggaaatagagatcttaccagt 128  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30058563 ttgaataaaaataaagtgaattgaggcagataaggggaaatagagatcttaccagt 30058618  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 29870834 - 29870885
Alignment:
Q  136 aaactttattgttggaatatgagctatcttgtcccaatcctcccctgttccc 187  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  29870834 aaactgtattattggaatatgagctatcttgtcccaatcctcccctgttccc 29870885  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 17419345 - 17419295
Alignment:
Q  137 aactttattgttggaatatgagctatcttgtcccaatcctcccctgttccc 187  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  17419345 aactttatttttggaatatgagctatcttgtcccaatcctccccggttccc 17419295  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 30398663 - 30398713
Alignment:
Q  137 aactttattgttggaatatgagctatcttgtcccaatcctcccctgttccc 187  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  30398663 aactgtatttttggaatatgagctatcttgtcccaatcctcccctgttccc 30398713  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 30434471 - 30434521
Alignment:
Q  137 aactttattgttggaatatgagctatcttgtcccaatcctcccctgttccc 187  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  30434471 aactctattcttggaatatgagctatcttgtcccaatcctcccctgttccc 30434521  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 30243816 - 30243776
Alignment:
Q  147 ttggaatatgagctatcttgtcccaatcctcccctgttccc 187  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30243816 ttggaatatgagctatcttgtcccaatcctcccctgttccc 30243776  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 30339969 - 30339929
Alignment:
Q  147 ttggaatatgagctatcttgtcccaatcctcccctgttccc 187  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30339969 ttggaatatgagctatcttgtcccaatcctcccctgttccc 30339929  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 30481980 - 30482031
Alignment:
Q  136 aaactttattgttggaatatgagctatcttgtcccaatcctcccctgttccc 187  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| |||||||    
T  30481980 aaactgtatttttggaatatgagctatcttgtcccaatcctcccatgttccc 30482031  T

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Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 29851761 - 29851818
Alignment:
Q  29 atgggttccaaagaagtcaagattgagaatatataaaaatatttttgaataaaaataa 86  Q
    ||||||| |||||||||||| | |||||||||||||||| ||||||||| ||||||||    
T  29851761 atgggttacaaagaagtcaacaatgagaatatataaaaagatttttgaaaaaaaataa 29851818  T

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Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 30058936 - 30058985
Alignment:
Q  136 aaactttattgttggaatatgagctatcttgtcccaatcctcccctgttc 185  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||||||||    
T  30058936 aaactgtatttttggaatatgagatatcttgtcccaatcctcccctgttc 30058985  T

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Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 30748297 - 30748342
Alignment:
Q  142 tattgttggaatatgagctatcttgtcccaatcctcccctgttccc 187  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||    
T  30748297 tatttttggaatatgagctatcttgtcccaatcctcccatgttccc 30748342  T

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Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 30678688 - 30678644
Alignment:
Q  136 aaactttattgttggaatatgagctatcttgtcccaatcctcccc 180  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||    
T  30678688 aaactgtatttttggaatatgagctatcttgtcccaatcctcccc 30678644  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 29851958 - 29851998
Alignment:
Q  147 ttggaatatgagctatcttgtcccaatcctcccctgttccc 187  Q
    |||||||||||| |||||||||||||||||| | |||||||    
T  29851958 ttggaatatgagatatcttgtcccaatcctcacatgttccc 29851998  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 30481888 - 30481920
Alignment:
Q  104 aaggggaaatagagatcttaccagtaaaattga 136  Q
    |||||||||| ||||||||||||||||||||||    
T  30481888 aaggggaaattgagatcttaccagtaaaattga 30481920  T

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Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 26705914 - 26705962
Alignment:
Q  139 ctttattgttggaatatgagctatcttgtcccaatcctcccctgttccc 187  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26705914 ctttatttttggaatatgagctatcttgtcccaatcctcccctgttccc 26705962  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 20298191 - 20298151
Alignment:
Q  147 ttggaatatgagctatcttgtcccaatcctcccctgttccc 187  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20298191 ttggaatatgagctatcttgtcccaatcctcccctgttccc 20298151  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 7098005 - 7098045
Alignment:
Q  147 ttggaatatgagctatcttgtcccaatcctcccctgttccc 187  Q
    |||||||||| |||||||||||||| || ||||||||||||    
T  7098005 ttggaatatgggctatcttgtcccagtcttcccctgttccc 7098045  T

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