View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16397_low_2 (Length: 509)
Name: NF16397_low_2
Description: NF16397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16397_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 17 - 498
Target Start/End: Original strand, 11902546 - 11903027
Alignment:
| Q |
17 |
tttatgcattaaccgattcattctatataagtgactacttacaacaccatcttctttttcttccacttgttggaaaaccaacggaacaaagtcattgaaa |
116 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902546 |
tttatgcattaaccgattcattctatatgagtgattacttacaacaccttcttctttttcttccacttgttggaaaaccaacggaacaaagtcattgaaa |
11902645 |
T |
|
| Q |
117 |
taaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaaca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902646 |
caaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaaca |
11902745 |
T |
|
| Q |
217 |
atgaacaatatgcaaaacataacttgtgaagcattggaagatccttgtaatacataaacttgagctcttgtagaaacttcctctccacttctgctatttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902746 |
atgaacaatatgcaaaacataacttgtgaagcattggaagatccttgtaatacataaacttgagctcttgtagaaacttcctctccacttctgctatttg |
11902845 |
T |
|
| Q |
317 |
gtctgctgccaaaattgaaacaccaccagcactttggttcttcatcaacattgctacggtcacaatcgcaagagggactccaccacaatccttcacgagt |
416 |
Q |
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| T |
11902846 |
gtctgctgccaaaattgaaacaccaccagcactttggttcttcatcaacattgctacggtcacaatcgcaagagggactccaccacaatccttcacgagt |
11902945 |
T |
|
| Q |
417 |
tcccattcgatgttgtcttgtttgttgttggttgaagttgaagttggcccacgaatttgttggaataacaattgagattcat |
498 |
Q |
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| T |
11902946 |
tcccattcgatgttgtcttgtttgttgttggttgaggttgaagtttgcccacgaatttgttggaataacaattgagattcat |
11903027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 74 - 241
Target Start/End: Complemental strand, 11859921 - 11859754
Alignment:
| Q |
74 |
ttcttccacttgttggaaaaccaacggaacaaagtcattgaaataaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagt |
173 |
Q |
| |
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||||||| |||| ||||||||||| ||||||||||| |||||| ||| | ||| ||||||||||| |||| || | ||||| |||||||| ||||||||| |
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| T |
11859921 |
ttcttccgcttgatggaaaaccaaaggaacaaagtctttgaaacaagcttgaccaaattgttgttctggattgataagaaacccttcagccgtccagagt |
11859822 |
T |
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| Q |
174 |
tcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataactt |
241 |
Q |
| |
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| ||| |||||||| |||||||||||||||||| ||||||||||||||||||||| || |||||||| |
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| T |
11859821 |
tgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcgaagcataactt |
11859754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 11827786 - 11827622
Alignment:
| Q |
74 |
ttcttccacttgttggaaaaccaacggaacaaagtcattgaaataaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagt |
173 |
Q |
| |
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||||||| |||| ||||||||||| ||||||||||| | |||| ||| ||| ||||||||||| |||| || | ||||| |||||| ||||||||||| |
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| T |
11827786 |
ttcttccgcttgatggaaaaccaaaggaacaaagtcttcgaaacaagcatgaccaaattgttgttctggattgataagaaacccttcaccagtccagagt |
11827687 |
T |
|
| Q |
174 |
tcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataa |
238 |
Q |
| |
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| ||| |||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
11827686 |
tgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataa |
11827622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 74 - 241
Target Start/End: Complemental strand, 12038695 - 12038513
Alignment:
| Q |
74 |
ttcttccacttgttggaaaaccaacggaacaaagtcattgaaataaggtcgacaaaattgttgttgtggaatggtg---------------agaaatcct |
158 |
Q |
| |
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|||||||||||| || |||||||| ||||||||||| |||||| ||| ||||| ||||||||||| |||| || || ||||||||| |
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| T |
12038695 |
ttcttccacttgatgaaaaaccaaaggaacaaagtcgttgaaacaagctcgaccaaattgttgttctggattgttgtttgaggaaattgttagaaatcct |
12038596 |
T |
|
| Q |
159 |
tcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataactt |
241 |
Q |
| |
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||||| ||||| |||| |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| || ||||| |
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| T |
12038595 |
tcagccgtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaactt |
12038513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 147 - 316
Target Start/End: Complemental strand, 11731517 - 11731348
Alignment:
| Q |
147 |
gtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataacttgtgaa |
246 |
Q |
| |
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|||| ||||||||||||| ||| |||| |||||||||||| ||||||||||||| || | |||||||||||||||| ||||||| || || || | | |
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| T |
11731517 |
gtgataaatccttcagcaaaccaaagttgaattaatctctcggcatcaatcaaatgatgttctggaaacaatgaacaaaatgcaaagcacaatttataac |
11731418 |
T |
|
| Q |
247 |
gcattggaagatccttgtaatacataaacttgagctcttgtagaaacttcctctccacttctgctatttg |
316 |
Q |
| |
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| |||||||||| |||||| ||||||||||||| | |||||||| ||||||||| ||| ||||||| |
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| T |
11731417 |
atgtgggaagatcctcgtaatatctaaacttgagctcgtttagaaactccctctccacgtcttctatttg |
11731348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 459
Target Start/End: Complemental strand, 11731301 - 11731226
Alignment:
| Q |
381 |
atcgcaagagggactccaccacaatccttcacgagttcccattcgatgttgtcttgtttgttgttggttgaagttgaag |
459 |
Q |
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||||||||||| ||||| |||||||||||||| | ||| || || ||||||||||||||||||||||||||||||| |
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| T |
11731301 |
atcgcaagaggcactcccccacaatccttcacaatctccaatccg---ttgtcttgtttgttgttggttgaagttgaag |
11731226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 11974974 - 11975064
Alignment:
| Q |
151 |
gaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataactt |
241 |
Q |
| |
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|||||||||| || ||| |||| | |||||||||||| |||||||||||| |||| ||||||||||||||| || ||||||| ||||| |
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| T |
11974974 |
gaaatccttctgctgtcaagagatgaattaatctctcgacatcaatcaaatgatcttgaggaaacaatgaacaaaattcaaaacaaaactt |
11975064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 11827870 - 11827839
Alignment:
| Q |
17 |
tttatgcattaaccgattcattctatataagt |
48 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
11827870 |
tttatgcattaaccgattcattctatataagt |
11827839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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