View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16397_low_3 (Length: 493)

Name: NF16397_low_3
Description: NF16397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16397_low_3
NF16397_low_3
[»] chr5 (8 HSPs)
chr5 (45-476)||(36945562-36946011)
chr5 (95-302)||(36962975-36963180)
chr5 (320-421)||(3907680-3907781)
chr5 (320-419)||(25545244-25545343)
chr5 (320-421)||(22399796-22399897)
chr5 (320-444)||(36059233-36059357)
chr5 (347-420)||(33029547-33029620)
chr5 (333-444)||(38029532-38029640)
[»] chr2 (8 HSPs)
chr2 (320-444)||(18719722-18719843)
chr2 (324-444)||(42094233-42094352)
chr2 (327-429)||(16209379-16209481)
chr2 (320-429)||(37810172-37810281)
chr2 (320-383)||(25666824-25666887)
chr2 (388-429)||(12779744-12779785)
chr2 (320-444)||(3466413-3466537)
chr2 (373-429)||(33171678-33171734)
[»] chr4 (2 HSPs)
chr4 (320-420)||(21433899-21433999)
chr4 (320-429)||(31758691-31758800)
[»] chr8 (6 HSPs)
chr8 (323-420)||(42072673-42072770)
chr8 (320-420)||(34504403-34504503)
chr8 (347-418)||(35586419-35586489)
chr8 (370-444)||(38357558-38357632)
chr8 (320-444)||(2288588-2288712)
chr8 (323-419)||(40175923-40176019)
[»] chr7 (2 HSPs)
chr7 (323-444)||(12275767-12275888)
chr7 (370-440)||(49106981-49107051)
[»] chr1 (5 HSPs)
chr1 (323-420)||(38663664-38663761)
chr1 (320-420)||(31970146-31970246)
chr1 (398-444)||(15366490-15366536)
chr1 (320-412)||(731356-731448)
chr1 (323-419)||(23317923-23318019)
[»] chr6 (1 HSPs)
chr6 (320-421)||(12731580-12731681)
[»] chr3 (5 HSPs)
chr3 (320-421)||(14345177-14345278)
chr3 (320-418)||(35357343-35357441)
chr3 (320-444)||(36480733-36480857)
chr3 (320-421)||(31205381-31205482)
chr3 (320-381)||(37341275-37341336)
[»] scaffold0003 (1 HSPs)
scaffold0003 (320-420)||(136347-136447)


Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 45 - 476
Target Start/End: Complemental strand, 36946011 - 36945562
Alignment:
Q  45 tcttcaatccattttgaccctcaaatattgtgatcaactannnnnnncatttataatttgattgtttaccaacaaagtttcccaaaattcatattagtgt 144  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36946011 tcttcaatccattttgaccctcaaatattgtgatcaactatttttttcatttataatttgattgtttaccaacaaagtttcccaaaattcatattagtgt 36945912  T
Q  145 catcatttgtacatttgtcatcctttagttcgacttttctttaaaattacaaatatataaccaactgaaaatgacatttcttttaaaacaaggaagacga 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||    
T  36945911 catcatttgtacatttgtcatcctttagttcgacttttctttaaaattacaaatatagaaccaactgaaaatgacatttcttttaaaac-aggaagaaga 36945813  T
Q  245 cattacatacacaagttactaattttgtactatagctatgggatcaaattatgcttgagagaaatgcagcaacac-------------------ttgatt 325  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||                   ||||||    
T  36945812 catcacatacacaagttactaattttgtactatagctatgggatcaaattatgtttgagagaaatgcagcaacacacattttaaaacactttctttgatt 36945713  T
Q  326 ggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgttggtaag 425  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||     
T  36945712 ggttaatattcacatgaaatccaccaaatttatatgagacctatatgatttggtgtgacttgtgtgaaattcaaccgatcaaaaagagtgtgttggtaaa 36945613  T
Q  426 tgtggtttagaatgtgtgtattgctgctggcattcctcttatgcttgatat 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36945612 tgtggtttagaatgtgtgtattgctgctggcattcctcttatgcttgatat 36945562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 302
Target Start/End: Complemental strand, 36963180 - 36962975
Alignment:
Q  95 ttataatttgattgtttaccaacaaagtttcccaaaattcatatt--agtgtcatcatttgt--acatttgtcatcctttagttcgacttttctttaaaa 190  Q
    ||||||||||||||| || | |||||||| |||||||||||||||  ||||| ||| |||||  || |||| |||||||||||| || ||||||||||||    
T  36963180 ttataatttgattgtctatctacaaagttccccaaaattcatattaaagtgttatcgtttgttgacgtttgccatcctttagttagatttttctttaaaa 36963081  T
Q  191 ttacaaatatataaccaactgaaaatgacatttcttttaaaacaaggaagacgacattacatacacaagttactaattttgtactatagctatgggatca 290  Q
    ||| ||||||| |   | |||||| |||||||||||| ||||||| || ||  | || ||||||| | |||||  |||||||||  |||||||||||||     
T  36963080 ttaaaaatataga---atctgaaagtgacatttctttaaaaacaaagatgataaaatcacatacatatgttacacattttgtac--tagctatgggatc- 36962987  T
Q  291 aattatgcttga 302  Q
    ||||||||||||    
T  36962986 aattatgcttga 36962975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 320 - 421
Target Start/End: Original strand, 3907680 - 3907781
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    |||||||||||| |||||||||  || ||||||||||||||| |||  | |||||||||||||||   |||||| || ||||||||||||||| ||||||    
T  3907680 ttgattggttaaaattcacatgggacccaccaaatttatatgggacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaagaatgtgtt 3907779  T
Q  420 gg 421  Q
    ||    
T  3907780 gg 3907781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 320 - 419
Target Start/End: Original strand, 25545244 - 25545343
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    |||||||||||| |||||||||| || ||| ||||||||||| |||  | ||||||||||||||||   ||||| || ||||||||||| ||||||||||    
T  25545244 ttgattggttaaaattcacatgagacccactaaatttatatgggaccgacatgatttggtgggactcacgtgaattttaaccaatcaaagagagtgtgtt 25545343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 421
Target Start/End: Original strand, 22399796 - 22399897
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    |||||||| ||| |||||||||| || ||||||||| |||||||||  | ||||||| || |||||  |||||| || ||||||||||| ||||||| ||    
T  22399796 ttgattggataaaattcacatgagacccaccaaattcatatgagacccagatgatttagtaggactcatgtgaattttaaccaatcaaagagagtgtatt 22399895  T
Q  420 gg 421  Q
    ||    
T  22399896 gg 22399897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 444
Target Start/End: Original strand, 36059233 - 36059357
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    ||||||| |||| |||||||||| || || ||||||||||||||||  | |||||||| |||||    ||| || || ||||||||||| | ||||||||    
T  36059233 ttgattgattaagattcacatgagacccatcaaatttatatgagacccacatgatttgatgggatccatgtaaattttaaccaatcaaataaagtgtgtt 36059332  T
Q  420 ggtaagtgtggtttagaatgtgtgt 444  Q
    || |||| ||  |||||||||||||    
T  36059333 ggaaagtatgtgttagaatgtgtgt 36059357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 420
Target Start/End: Original strand, 33029547 - 33029620
Alignment:
Q  347 caccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgttg 420  Q
    ||||||||||||||||| || || | |||||||||||||  |||||  || |||| |||||| |||||||||||    
T  33029547 caccaaatttatatgagtcacatctaatttggtgggactcatgtgagttttaaccgatcaaagagagtgtgttg 33029620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 444
Target Start/End: Complemental strand, 38029640 - 38029532
Alignment:
Q  333 attcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgttggtaagtgtggtt 432  Q
    ||||| ||||||| |||| |||||||||||||   | ||||||||||| |||   |||||| || |||||||||||   |||||||||| || ||||  |    
T  38029640 attcatatgaaacccacccaatttatatgagatccacatgatttggtgagacccatgtgaattttaaccaatcaaa---agtgtgttggaaaatgtgtgt 38029544  T
Q  433 tagaatgtgtgt 444  Q
    ||||||||||||    
T  38029543 tagaatgtgtgt 38029532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 320 - 444
Target Start/End: Complemental strand, 18719843 - 18719722
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    |||||||||||| ||| |||||| || || |||||||||||| |||  | |||||||||||| ||| ||||||| || ||||||||||||||||||||||    
T  18719843 ttgattggttaa-atttacatgagacccatcaaatttatatgggacccacatgatttggtggaactcgtgtgaattttaaccaatcaaaaagagtgtgtt 18719745  T
Q  420 ggtaagtgtggtttagaatgtgtgt 444  Q
    |  || ||||  |||||||||||||    
T  18719744 gaaaaatgtg--ttagaatgtgtgt 18719722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 444
Target Start/End: Original strand, 42094233 - 42094352
Alignment:
Q  324 ttggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgttggta 423  Q
    |||||||| |||||||||  || ||||||||||||||| |||  | |||||||||||||||   |||||| || ||||||||||| || ||||||||  |    
T  42094233 ttggttaaaattcacatgggacccaccaaatttatatgggacccacatgatttggtgggac-catgtgaattttaaccaatcaaagagtgtgtgttgaaa 42094331  T
Q  424 agtgtggtttagaatgtgtgt 444  Q
    ||||||  ||| |||||||||    
T  42094332 agtgtgtgttaaaatgtgtgt 42094352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 429
Target Start/End: Complemental strand, 16209481 - 16209379
Alignment:
Q  327 gttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgttggtaagt 426  Q
    ||||| ||||| ||||||| ||||||||||||||| |||  | |  ||||||||| |||  |||||| || ||||||| ||| |||||||||||| ||||    
T  16209481 gttaaaattcaaatgaaacccaccaaatttatatgggaccgacaaaatttggtggaactcatgtgaattttaaccaattaaagagagtgtgttggaaagt 16209382  T
Q  427 gtg 429  Q
    |||    
T  16209381 gtg 16209379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 429
Target Start/End: Original strand, 37810172 - 37810281
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    |||||||||||  |||||||||  || ||||||||||||||| |||  || | ||||||||||||   |||||| || |||||||||||  ||||||| |    
T  37810172 ttgattggttataattcacatgggacccaccaaatttatatgggacccatctaatttggtgggacccatgtgaattttaaccaatcaaagtgagtgtgat 37810271  T
Q  420 ggtaagtgtg 429  Q
    || |||||||    
T  37810272 ggaaagtgtg 37810281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 383
Target Start/End: Original strand, 25666824 - 25666887
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtggga 383  Q
    ||||||| |||| |||||||||| || |||||||||||||||  || || ||||||||||||||    
T  25666824 ttgattgattaaaattcacatgagacccaccaaatttatatggaacctacatgatttggtggga 25666887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Original strand, 12779744 - 12779785
Alignment:
Q  388 tgtgaaattcaaccaatcaaaaagagtgtgttggtaagtgtg 429  Q
    |||||| || ||||||| ||||||||||||||||||||||||    
T  12779744 tgtgaattttaaccaattaaaaagagtgtgttggtaagtgtg 12779785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 444
Target Start/End: Original strand, 3466413 - 3466537
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    |||||||||||| |||||||||| || ||||||||| ||||| |||  | | ||||| |||| ||   |||||| || ||||||||||| ||| | ||||    
T  3466413 ttgattggttaaaattcacatgagacccaccaaattcatatgggacccacacgatttagtggaacccatgtgaattttaaccaatcaaagagactatgtt 3466512  T
Q  420 ggtaagtgtggtttagaatgtgtgt 444  Q
     | |||||||  ||| |||||||||    
T  3466513 tgaaagtgtgtgttaaaatgtgtgt 3466537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 429
Target Start/End: Original strand, 33171678 - 33171734
Alignment:
Q  373 atttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgttggtaagtgtg 429  Q
    ||||||||||||   ||||||||| ||||||||||| |||||||||||  |||||||    
T  33171678 atttggtgggacccatgtgaaatttaaccaatcaaagagagtgtgttgaaaagtgtg 33171734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 420
Target Start/End: Original strand, 21433899 - 21433999
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    |||||||||||| |||||||||| || |||||||||||||||||||  | ||||||||||||||    |||||| || ||||||||||  ||||||||||    
T  21433899 ttgattggttaaaattcacatgagacccaccaaatttatatgagacccacatgatttggtgggatccatgtgaattttaaccaatcaatgagagtgtgtt 21433998  T
Q  420 g 420  Q
    |    
T  21433999 g 21433999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 429
Target Start/End: Complemental strand, 31758800 - 31758691
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    ||||||| |||| ||||  |||| || ||||||||||| |||||||  | ||||||||||||  ||| |||||| || ||||||||||| ||| ||||||    
T  31758800 ttgattgattaaaattcttatgagacccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaatcaaatagaatgtgtt 31758701  T
Q  420 ggtaagtgtg 429  Q
    |  |||||||    
T  31758700 gaaaagtgtg 31758691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 420
Target Start/End: Complemental strand, 42072770 - 42072673
Alignment:
Q  323 attggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgttg 420  Q
    ||||||||| ||| |||||  || |||||||||||||||||||  |||||||||||||||||   ||||||  | ||||||||||| |||||||||||    
T  42072770 attggttaaaatttacatgggacccaccaaatttatatgagacccatatgatttggtgggacccatgtgaatgttaaccaatcaaagagagtgtgttg 42072673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 320 - 420
Target Start/End: Original strand, 34504403 - 34504503
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    |||||||||||| ||||||||| ||| ||||||||||||||| |||  | ||||||||||| |||   || ||| || ||||||||||||| ||||||||    
T  34504403 ttgattggttaaaattcacatggaactcaccaaatttatatgggacccacatgatttggtgtgacccatgcgaattttaaccaatcaaaaaaagtgtgtt 34504502  T
Q  420 g 420  Q
    |    
T  34504503 g 34504503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 418
Target Start/End: Complemental strand, 35586489 - 35586419
Alignment:
Q  347 caccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgt 418  Q
    |||||||||||||||||||  | |||||||||||||||  ||||||| || ||||||||||| |||||||||    
T  35586489 caccaaatttatatgagactcacatgatttggtgggac-cgtgtgaattttaaccaatcaaagagagtgtgt 35586419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 444
Target Start/End: Complemental strand, 38357632 - 38357558
Alignment:
Q  370 atgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgttggtaagtgtggtttagaatgtgtgt 444  Q
    ||||||||||||| ||  |||||  |||||| ||||||| |||||||||||| |||||||   ||||||||||||    
T  38357632 atgatttggtgggtctcatgtgagtttcaactaatcaaagagagtgtgttggaaagtgtgtgctagaatgtgtgt 38357558  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 444
Target Start/End: Complemental strand, 2288712 - 2288588
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    |||||||||||| |||||||||  |  || |||||||||||| |||  || ||||||||||  ||   ||| || || ||||||||||| ||||||||||    
T  2288712 ttgattggttaaaattcacatgggatccatcaaatttatatgggacccatgtgatttggtgaaacccatgtaaattttaaccaatcaaagagagtgtgtt 2288613  T
Q  420 ggtaagtgtggtttagaatgtgtgt 444  Q
     | |||||||  ||||||| |||||    
T  2288612 cgaaagtgtgtgttagaatatgtgt 2288588  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 419
Target Start/End: Original strand, 40175923 - 40176019
Alignment:
Q  323 attggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    ||||||||| |||||||||  |  ||||||||||||||| |||  | || ||||||||||||   |||||| || ||||||| |||| |||||||||    
T  40175923 attggttaaaattcacatgggatccaccaaatttatatgggacccacataatttggtgggacccatgtgaattttaaccaattaaaaggagtgtgtt 40176019  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 444
Target Start/End: Original strand, 12275767 - 12275888
Alignment:
Q  323 attggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgttggt 422  Q
    ||||||||| | |||||||  || ||||||||||||||| |||  | |||||||||||||||   | |||| || |||||||| || ||||||||||||     
T  12275767 attggttaaaaatcacatgggacccaccaaatttatatgggacccacatgatttggtgggacccatatgaattttaaccaatcgaagagagtgtgttgga 12275866  T
Q  423 aagtgtggtttagaatgtgtgt 444  Q
    |||||||  |||||||||||||    
T  12275867 aagtgtgtgttagaatgtgtgt 12275888  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 440
Target Start/End: Original strand, 49106981 - 49107051
Alignment:
Q  370 atgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgttggtaagtgtggtttagaatgt 440  Q
    ||||||||||||||| | |||||| || ||||||||||| |||||||||||  |||||||  |||||||||    
T  49106981 atgatttggtgggacctatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgttagaatgt 49107051  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 420
Target Start/End: Complemental strand, 38663761 - 38663664
Alignment:
Q  323 attggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgttg 420  Q
    ||||||||| |||||||||  || ||||||||||||||  |||  ||||||||||||||||| | |||||| |  ||||||||||| |||||||||||    
T  38663761 attggttaaaattcacatgggacccaccaaatttatataggacccatatgatttggtgggacctatgtgaattgtaaccaatcaaagagagtgtgttg 38663664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 320 - 420
Target Start/End: Original strand, 31970146 - 31970246
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    |||||||||||| ||||||||  ||| ||||||||||||||| |||  | |||||||||||||||   | ||||||| || |||| ||||||||||||||    
T  31970146 ttgattggttaaaattcacattgaacccaccaaatttatatgggacccacatgatttggtgggacccatatgaaatttaatcaattaaaaagagtgtgtt 31970245  T
Q  420 g 420  Q
    |    
T  31970246 g 31970246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 444
Target Start/End: Complemental strand, 15366536 - 15366490
Alignment:
Q  398 aaccaatcaaaaagagtgtgttggtaagtgtggtttagaatgtgtgt 444  Q
    |||||||||||||||||||||||| |||||||  |||||||||||||    
T  15366536 aaccaatcaaaaagagtgtgttggaaagtgtgtcttagaatgtgtgt 15366490  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 412
Target Start/End: Original strand, 731356 - 731448
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaaga 412  Q
    ||||||| |||| |||||||||| |  ||||||||||||||| |||  | ||||||||||| ||||  ||| || || ||||||| |||||||    
T  731356 ttgattgattaaaattcacatgagattcaccaaatttatatgggacccacatgatttggtgcgactcatgtaaattttaaccaataaaaaaga 731448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 419
Target Start/End: Complemental strand, 23318019 - 23317923
Alignment:
Q  323 attggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    ||||||||| |||||||||| |  ||| ||||||||||| |||  | ||||||||||||||| | |||||| || ||| ||| |||  |||||||||    
T  23318019 attggttaaaattcacatgagatccactaaatttatatgggacccacatgatttggtgggacctatgtgaattttaacaaattaaagggagtgtgtt 23317923  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 421
Target Start/End: Original strand, 12731580 - 12731681
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    |||||||||||| |||||||||| || || ||||||||| || |||  | |||||||||||| |  | ||| || || ||||||||||||||||||||||    
T  12731580 ttgattggttaaaattcacatgagacccatcaaatttatttgggacccacatgatttggtggaagctatgtaaattttaaccaatcaaaaagagtgtgtt 12731679  T
Q  420 gg 421  Q
    ||    
T  12731680 gg 12731681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 421
Target Start/End: Original strand, 14345177 - 14345278
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    |||||||||||| || ||||||| || ||||||||||||||| |||  | |||||||||||||| |  |||||| || ||| ||| || |||||||||||    
T  14345177 ttgattggttaaaatccacatgagacccaccaaatttatatgggacccacatgatttggtgggattcatgtgaattttaacgaataaagaagagtgtgtt 14345276  T
Q  420 gg 421  Q
    ||    
T  14345277 gg 14345278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 35357343 - 35357441
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgt 418  Q
    |||||||||||| | |||||||  |  ||||||||||||||| ||| || |||||||||| ||||   |||||| || ||||||||||| |||||||||    
T  35357343 ttgattggttaaaactcacatgtgaaccaccaaatttatatgggacttacatgatttggtaggacccatgtgaattttaaccaatcaaagagagtgtgt 35357441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 444
Target Start/End: Original strand, 36480733 - 36480857
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    |||||||||||| |||||||||  || || |||||||||||| |||  | |||||||||||||||   |||||| || | ||||||||| ||||  ||||    
T  36480733 ttgattggttaaaattcacatgggacccaacaaatttatatgggacccacatgatttggtgggacccatgtgaattttagccaatcaaagagagaatgtt 36480832  T
Q  420 ggtaagtgtggtttagaatgtgtgt 444  Q
    |  |||||||  ||| |||||||||    
T  36480833 gaaaagtgtgtgttaaaatgtgtgt 36480857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 421
Target Start/End: Complemental strand, 31205482 - 31205381
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    ||||||||| || |||||||||| || |||||| |||||||| |||  | ||||||||||  |||   ||| || || ||||||||||| ||||||||||    
T  31205482 ttgattggtcaaaattcacatgagacccaccaattttatatgggacccacatgatttggtaagacccatgtaaattttaaccaatcaaagagagtgtgtt 31205383  T
Q  420 gg 421  Q
    ||    
T  31205382 gg 31205381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 381
Target Start/End: Complemental strand, 37341336 - 37341275
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgg 381  Q
    |||||||||||| ||||||||| ||| ||  |||||||||||||||  | ||||||||||||    
T  37341336 ttgattggttaaaattcacatgtaacccattaaatttatatgagacccacatgatttggtgg 37341275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 420
Target Start/End: Original strand, 136347 - 136447
Alignment:
Q  320 ttgattggttaatattcacatgaaacacaccaaatttatatgagacatatatgatttggtgggacttgtgtgaaattcaaccaatcaaaaagagtgtgtt 419  Q
    |||||||||||| ||||| ||||  | || |||||||||||| | || | |||||||| ||||||   |||||  || ||||||||||||||||||||||    
T  136347 ttgattggttaaaattcatatgagtcccatcaaatttatatgggtcacacatgatttgatgggacacatgtgagttttaaccaatcaaaaagagtgtgtt 136446  T
Q  420 g 420  Q
    |    
T  136447 g 136447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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